GenomeNet

Database: Pfam
Entry: bact_SelB_WH_2nd
LinkDB: bact_SelB_WH_2nd
Original site: bact_SelB_WH_2nd 
#=GF ID   bact_SelB_WH_2nd
#=GF AC   PF21214.1
#=GF DE   Selenocysteine-specific elongation factor, bacteria, winged helix
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF AU   Lazaro Pinto Beatriz;0000-0001-6837-2941
#=GF SE   ECOD:EF21185
#=GF GA   27.00 27.00;
#=GF TC   27.10 27.10;
#=GF NC   26.90 26.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -E 1000 -Z 75585367 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF CL   CL0123
#=GF RC   Paper describing PDB structure 1lva
#=GF RN   [1]
#=GF RM   12145214
#=GF RT   Crystal structure of an mRNA-binding fragment of Moorella
#=GF RT   thermoacetica elongation factor SelB. 
#=GF RA   Selmer M, Su XD; 
#=GF RL   EMBO J. 2002;21:4145-4153.
#=GF RC   Paper describing PDB structure 1wsu
#=GF RN   [2]
#=GF RM   15665870
#=GF RT   Structural basis for mRNA recognition by elongation factor SelB.
#=GF RA   Yoshizawa S, Rasubala L, Ose T, Kohda D, Fourmy D, Maenaka K;
#=GF RL   Nat Struct Mol Biol. 2005;12:198-203.
#=GF RC   Paper describing PDB structure 2pjp
#=GF RN   [3]
#=GF RM   17537456
#=GF RT   Structural insight into a molecular switch in tandem
#=GF RT   winged-helix motifs from elongation factor SelB.
#=GF RA   Soler N, Fourmy D, Yoshizawa S;
#=GF RL   J Mol Biol. 2007;370:728-741.
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This domain is found in Selenocysteine-specific elongation
#=GF CC   factor from Escherichia coli (SelB) and similar bacterial
#=GF CC   sequences. SelB is a translation factor necessary for the
#=GF CC   incorporation of selenocysteine into proteins. The C-terminal
#=GF CC   region of this protein in bacteria shows four winged-helix (WH)
#=GF CC   domains arranged in tandem, which form two globular structures.
#=GF CC   This entry represents the second pair of WH domains (WH3 and 4).
#=GF CC   Each WH domain is an alpha-beta structure consisting of three
#=GF CC   alpha-helices and a twisted three- stranded antiparallel
#=GF CC   beta-sheet [1-3].
#=GF SQ   365
#=GS A0A263HDI0_9PAST/490-551  AC A0A263HDI0.1
#=GS A0A518U7N7_9PROT/497-558  AC A0A518U7N7.1
#=GS A0A521FIF8_9RHOB/489-551  AC A0A521FIF8.1
#=GS B4F0R9_PROMH/495-554      AC B4F0R9.1
#=GS A0A1G7AK24_9BURK/507-568  AC A0A1G7AK24.1
#=GS W9T1C3_9PSED/213-273      AC W9T1C3.1
#=GS A0A7G9RLK8_9BURK/509-570  AC A0A7G9RLK8.1
#=GS A0A1H8XRP7_9PROT/501-561  AC A0A1H8XRP7.1
#=GS C0ASP2_9GAMM/495-554      AC C0ASP2.1
#=GS A0A370NEN3_9BURK/508-569  AC A0A370NEN3.1
#=GS A0A5R9QBC4_9GAMM/504-565  AC A0A5R9QBC4.1
#=GS I0HN91_RUBGI/507-568      AC I0HN91.1
#=GS A0A178MPM4_9PROT/496-558  AC A0A178MPM4.1
#=GS A0A1I2ZH54_9GAMM/514-575  AC A0A1I2ZH54.1
#=GS A0A2S5T267_9BURK/508-569  AC A0A2S5T267.1
#=GS A1B5W5_PARDP/502-564      AC A1B5W5.1
#=GS A0A853G276_9BURK/510-570  AC A0A853G276.1
#=GS A0A3N1IPQ1_9ENTR/487-545  AC A0A3N1IPQ1.1
#=GS A0A6J5D2M8_9BURK/508-569  AC A0A6J5D2M8.1
#=GS A0A7G8W5H2_9BURK/525-586  AC A0A7G8W5H2.1
#=GS A0A239SM76_9BURK/512-573  AC A0A239SM76.1
#=GS A0A7W7KMC9_9PSED/506-565  AC A0A7W7KMC9.1
#=GS A0A1H8F5S0_9BURK/516-576  AC A0A1H8F5S0.1
#=GS A0A0Q5CWP1_9BURK/506-566  AC A0A0Q5CWP1.1
#=GS Q8XDI8_ECO57/487-545      AC Q8XDI8.1
#=GS E6L0D1_9PAST/490-551      AC E6L0D1.1
#=GS Q328Y8_SHIDS/487-545      AC Q328Y8.1
#=GS A0A494X830_9BURK/505-565  AC A0A494X830.1
#=GS I4N2K0_9PSED/506-567      AC I4N2K0.1
#=GS A0A0H3KU37_BURM1/509-569  AC A0A0H3KU37.1
#=GS A0A6A7LZS1_9PROT/501-561  AC A0A6A7LZS1.1
#=GS A0A6J5H1S0_9BURK/514-566  AC A0A6J5H1S0.1
#=GS A0A2M8S4H0_9PAST/490-551  AC A0A2M8S4H0.1
#=GS A0A1R0FB35_9HYPH/507-569  AC A0A1R0FB35.1
#=GS A0A0Q6MHE5_9BURK/503-564  AC A0A0Q6MHE5.1
#=GS E3G9B0_ENTLS/486-544      AC E3G9B0.1
#=GS A0A4P7J527_9ENTR/487-545  AC A0A4P7J527.1
#=GS M4R6R1_BIBTR/489-549      AC M4R6R1.1
#=GS A0A4R6VC74_9PAST/489-550  AC A0A4R6VC74.1
#=GS A0A0J5P5K1_9PAST/486-546  AC A0A0J5P5K1.1
#=GS A0A097R6M7_HAFAL/495-553  AC A0A097R6M7.1
#=GS Q931D5_RHIME/506-568      AC Q931D5.1
#=GS A0A250L0Z5_9GAMM/504-565  AC A0A250L0Z5.1
#=GS A0A6S7B0A8_9BURK/504-564  AC A0A6S7B0A8.1
#=GS Q63JQ4_BURPS/508-569      AC Q63JQ4.1
#=GS A0A327L2A2_9HYPH/517-579  AC A0A327L2A2.1
#=GS Q88QJ7_PSEPK/506-567      AC Q88QJ7.1
#=GS A0A084ZRB1_9ENTR/487-545  AC A0A084ZRB1.1
#=GS A0A069PLF2_9BURK/505-565  AC A0A069PLF2.1
#=GS W6MDL7_9GAMM/507-569      AC W6MDL7.1
#=GS A0A2T6F753_9BURK/520-566  AC A0A2T6F753.1
#=GS A0A844AUJ7_9BURK/506-565  AC A0A844AUJ7.1
#=GS A0A095ZCM0_9BURK/517-578  AC A0A095ZCM0.1
#=GS A0A085H9H3_9GAMM/500-558  AC A0A085H9H3.1
#=GS A0A6F8VGI3_9PROT/507-568  AC A0A6F8VGI3.1
#=GS A0A118DVD0_9BURK/508-569  AC A0A118DVD0.1
#=GS A0A663BHF7_9ENTR/488-546  AC A0A663BHF7.1
#=GS A0A014NQS5_9BURK/507-568  AC A0A014NQS5.1
#=GS A0A254NEV8_9BURK/488-549  AC A0A254NEV8.1
#=GS I3DBM0_9PAST/490-551      AC I3DBM0.1
#=GS S5XST4_PARAH/529-591      AC S5XST4.1
#=GS A0A443IGV5_9GAMM/487-545  AC A0A443IGV5.1
#=GS A0A1G8GCV1_9RHOO/504-565  AC A0A1G8GCV1.1
#=GS A0A1M7GDQ1_9RHOB/508-570  AC A0A1M7GDQ1.1
#=GS A0A344PHR2_9RHOB/506-567  AC A0A344PHR2.1
#=GS A0A1I6LFX5_9BURK/572-633  AC A0A1I6LFX5.1
#=GS A0A1N7S3A2_9BURK/518-569  AC A0A1N7S3A2.1
#=GS A0A1H0G8R0_9PSED/505-565  AC A0A1H0G8R0.1
#=GS D8MLP4_ERWBE/486-544      AC D8MLP4.1
#=GS A0A0K6IV99_9PROT/502-566  AC A0A0K6IV99.1
#=GS A0A4R6DPI9_9RHOO/523-572  AC A0A4R6DPI9.1
#=GS A0A099FHI9_9RHOB/503-565  AC A0A099FHI9.1
#=GS K8WL70_9GAMM/495-554      AC K8WL70.1
#=GS A0A0J8Y4W4_9ENTR/487-545  AC A0A0J8Y4W4.1
#=GS A0A848G451_9RHOO/521-573  AC A0A848G451.1
#=GS A0A2K8UFM2_9GAMM/505-567  AC A0A2K8UFM2.1
#=GS C5BC02_EDWI9/495-553      AC C5BC02.1
#=GS A0A1I6MES5_9GAMM/507-569  AC A0A1I6MES5.1
#=GS A0A1Y6L4B6_9GAMM/512-572  AC A0A1Y6L4B6.1
#=GS D2TJS6_CITRI/487-545      AC D2TJS6.1
#=GS Q9HV02_PSEAE/504-565      AC Q9HV02.1
#=GS A0A2K1Q366_9GAMM/512-572  AC A0A2K1Q366.1
#=GS A0A1Y0CXY9_9GAMM/504-565  AC A0A1Y0CXY9.1
#=GS A0A0J5KZ40_PLUGE/487-545  AC A0A0J5KZ40.1
#=GS A0A0S1Y594_9BORD/570-631  AC A0A0S1Y594.1
#=GS A0A3S4G6A1_SALBN/487-545  AC A0A3S4G6A1.1
#=GS B2JQU5_PARP8/509-569      AC B2JQU5.1
#=GS A0A7W9Z6B7_9GAMM/507-569  AC A0A7W9Z6B7.1
#=GS A0A3N7EXK5_9BURK/527-588  AC A0A3N7EXK5.1
#=GS A0A0A3AQ70_9PAST/493-554  AC A0A0A3AQ70.1
#=GS A0A1B7JU97_9GAMM/495-554  AC A0A1B7JU97.1
#=GS G2J4M5_PSEUL/504-563      AC G2J4M5.1
#=GS A0A1R1IBN8_9RHOO/495-556  AC A0A1R1IBN8.1
#=GS A0A158JDU7_9BURK/518-565  AC A0A158JDU7.1
#=GS A0A4S4ART5_9RHOO/534-581  AC A0A4S4ART5.1
#=GS A0A6H0T682_9PAST/484-544  AC A0A6H0T682.1
#=GS A0A0H4WR30_9BORD/504-564  AC A0A0H4WR30.1
#=GS A0A840RZL2_9BURK/564-624  AC A0A840RZL2.1
#=GS A0A1M5VEN5_9BURK/510-571  AC A0A1M5VEN5.1
#=GS A0A1I7JS69_9BURK/508-569  AC A0A1I7JS69.1
#=GS A0A126Z9A8_9BURK/503-564  AC A0A126Z9A8.1
#=GS A0A1A7PXP0_9PAST/487-547  AC A0A1A7PXP0.1
#=GS I2B3X5_SHIBC/487-545      AC I2B3X5.1
#=GS Q8ZL70_SALTY/488-546      AC Q8ZL70.1
#=GS A0A0A1VJ38_9BURK/508-569  AC A0A0A1VJ38.1
#=GS A0A378AX17_KLEPO/488-546  AC A0A378AX17.1
#=GS E7RXY2_9BURK/576-636      AC E7RXY2.1
#=GS E9CKZ6_9GAMM/446-504      AC E9CKZ6.1
#=GS A0A1G9MQV6_9PSED/504-565  AC A0A1G9MQV6.1
#=GS A0A4R1L1V2_9PAST/490-551  AC A0A4R1L1V2.1
#=GS SELB_ECOLI/487-545        AC P14081.3
#=GS T0P1D2_PHOTE/460-518      AC T0P1D2.1
#=GS A0A6L6J9Q5_9RHOB/502-564  AC A0A6L6J9Q5.1
#=GS A0A1H7RAD3_9BURK/525-585  AC A0A1H7RAD3.1
#=GS A0A0B6SC91_BURPL/505-565  AC A0A0B6SC91.1
#=GS A0A0N1J623_9PSED/506-567  AC A0A0N1J623.1
#=GS A0A346BAW8_9BURK/508-567  AC A0A346BAW8.1
#=GS A0A160FTE5_9BURK/508-566  AC A0A160FTE5.1
#=GS A0A6H9YBK0_9PROT/500-561  AC A0A6H9YBK0.1
#=GS A0A0H3GUP2_KLEPH/488-546  AC A0A0H3GUP2.1
#=GS C1D4F7_LARHH/507-567      AC C1D4F7.1
#=GS S6BP36_PSERE/504-565      AC S6BP36.1
#=GS A0A078LW46_9PSED/504-565  AC A0A078LW46.1
#=GS A0A8B7PBJ0_HYAAZ/530-591  AC A0A8B7PBJ0.1
#=GS A0A1H2PSS1_9BURK/517-570  AC A0A1H2PSS1.1
#=GS A0A4R5M8J3_9BURK/509-568  AC A0A4R5M8J3.1
#=GS F9QBQ6_9PAST/337-398      AC F9QBQ6.1
#=GS A0A7Z2W0T4_9BURK/524-577  AC A0A7Z2W0T4.1
#=GS A8ARH6_CITK8/487-545      AC A8ARH6.1
#=GS A0A6G8BZS2_9BURK/508-569  AC A0A6G8BZS2.1
#=GS A0A4R1FYL5_9PAST/489-550  AC A0A4R1FYL5.1
#=GS A0A2P1BUB8_9RHOB/496-558  AC A0A2P1BUB8.1
#=GS A0A5J6QBU8_9PSED/507-568  AC A0A5J6QBU8.1
#=GS B2FT12_STRMK/513-572      AC B2FT12.1
#=GS A0A0N1B214_9PROT/504-565  AC A0A0N1B214.1
#=GS N2IW16_9PSED/506-567      AC N2IW16.1
#=GS Q7MY01_PHOLL/495-553      AC Q7MY01.1
#=GS A0A1T0B2A6_9PAST/491-552  AC A0A1T0B2A6.1
#=GS A0A0D6TCP4_9RHOB/495-557  AC A0A0D6TCP4.1
#=GS A0A4V2T1D0_9PAST/489-550  AC A0A4V2T1D0.1
#=GS A0A0U3N160_9BURK/523-584  AC A0A0U3N160.1
#=GS Q0K2N6_CUPNH/512-565      AC Q0K2N6.1
#=GS A0A857J6C0_9BURK/516-577  AC A0A857J6C0.1
#=GS A0A4V3YX99_9BURK/524-585  AC A0A4V3YX99.1
#=GS L0DW92_THIND/508-569      AC L0DW92.1
#=GS A0A5P9C305_9PSED/505-565  AC A0A5P9C305.1
#=GS A0A542MDY6_9BURK/506-567  AC A0A542MDY6.1
#=GS A0A1T0ARB1_9PAST/486-546  AC A0A1T0ARB1.1
#=GS A0A4V3BQA1_9BURK/508-569  AC A0A4V3BQA1.1
#=GS A0A068R0K8_9GAMM/507-565  AC A0A068R0K8.1
#=GS A0A1H1LBI5_9PSED/505-565  AC A0A1H1LBI5.1
#=GS A0A1Y0KWM7_9PSED/504-565  AC A0A1Y0KWM7.1
#=GS K9DLP7_9BURK/505-565      AC K9DLP7.1
#=GS A0A4R5W1D4_9BURK/506-566  AC A0A4R5W1D4.1
#=GS A0A063BBG9_9BURK/508-569  AC A0A063BBG9.1
#=GS J7TPX6_MORMO/495-553      AC J7TPX6.1
#=GS A0A2S0P6M4_9NEIS/505-565  AC A0A2S0P6M4.1
#=GS A0A6G8AHX9_9BURK/507-568  AC A0A6G8AHX9.1
#=GS A0A0J6NKD7_9NEIS/500-560  AC A0A0J6NKD7.1
#=GS A0A1N6J2Y6_9BURK/508-569  AC A0A1N6J2Y6.1
#=GS A0A147HCC8_9BURK/503-564  AC A0A147HCC8.1
#=GS A0A2A2AG74_9BURK/528-588  AC A0A2A2AG74.1
#=GS A0A1V3TRD5_9PAST/486-546  AC A0A1V3TRD5.1
#=GS A0A1D9HAP4_9BURK/508-569  AC A0A1D9HAP4.1
#=GS A0A3M6PZ78_9BURK/530-588  AC A0A3M6PZ78.1
#=GS A0A1I3BFI1_9RHOB/503-564  AC A0A1I3BFI1.1
#=GS A0A0U4VL16_9PSED/505-565  AC A0A0U4VL16.1
#=GS A0A2S5AIA2_9PAST/455-516  AC A0A2S5AIA2.1
#=GS A0A0D6S922_9PSED/504-565  AC A0A0D6S922.1
#=GS F4GSX2_PUSST/510-571      AC F4GSX2.1
#=GS H5V1L0_ATLHE/487-545      AC H5V1L0.1
#=GS A0A4P7KNV8_9GAMM/495-554  AC A0A4P7KNV8.1
#=GS A0A3N9QGR5_9RHOB/494-553  AC A0A3N9QGR5.1
#=GS A0A211ZMZ0_9PROT/507-569  AC A0A211ZMZ0.1
#=GS A0A1Q8IXN1_9BURK/507-566  AC A0A1Q8IXN1.1
#=GS A0A2I0FW84_9GAMM/488-546  AC A0A2I0FW84.1
#=GS A0A1Y0G6S0_9PROT/507-568  AC A0A1Y0G6S0.1
#=GS A3N2K9_ACTP2/485-545      AC A3N2K9.1
#=GS A0A1X7G2G3_TRICW/505-565  AC A0A1X7G2G3.1
#=GS A0A246JFS9_9BURK/577-638  AC A0A246JFS9.1
#=GS A0A6M4FGL8_9GAMM/514-575  AC A0A6M4FGL8.1
#=GS A0A523Q115_9BURK/530-591  AC A0A523Q115.1
#=GS A0A6M8UHS7_9GAMM/487-545  AC A0A6M8UHS7.1
#=GS A0A420XG63_9PAST/486-546  AC A0A420XG63.1
#=GS A0A0J1D1E7_9BURK/283-341  AC A0A0J1D1E7.1
#=GS A0A5Q2K879_9ENTR/487-545  AC A0A5Q2K879.1
#=GS A0A859R4H9_9ENTR/488-546  AC A0A859R4H9.1
#=GS A0A2S0MGP4_9BURK/508-569  AC A0A2S0MGP4.1
#=GS A0A2J6MSV4_9BURK/518-568  AC A0A2J6MSV4.1
#=GS A0A2G8EAM1_9GAMM/487-545  AC A0A2G8EAM1.1
#=GS A0A562RM52_9BURK/504-563  AC A0A562RM52.1
#=GS A0A086CZI2_9GAMM/152-213  AC A0A086CZI2.1
#=GS A0A1G9K5B6_9RHOB/504-566  AC A0A1G9K5B6.1
#=GS A0A1S2TEU3_9GAMM/502-562  AC A0A1S2TEU3.1
#=GS A0A2D2MBW4_9PSED/506-567  AC A0A2D2MBW4.1
#=GS A0A363RSG0_9BURK/506-567  AC A0A363RSG0.1
#=GS A4JMF3_BURVG/509-570      AC A4JMF3.1
#=GS G0AI67_COLFT/532-593      AC G0AI67.1
#=GS A0A1I3ID33_9HYPH/505-567  AC A0A1I3ID33.1
#=GS U3U098_9ENTR/488-546      AC U3U098.1
#=GS L0LX40_ENTBF/487-545      AC L0LX40.1
#=GS A0A0W7YSR0_9BURK/507-568  AC A0A0W7YSR0.1
#=GS A0A0K6H2X6_9NEIS/506-566  AC A0A0K6H2X6.1
#=GS A0A085U8N1_YERRU/496-554  AC A0A085U8N1.1
#=GS C5AHA3_BURGB/505-565      AC C5AHA3.1
#=GS Q13R44_PARXL/518-566      AC Q13R44.1
#=GS A0A4S4AX27_9RHOO/525-580  AC A0A4S4AX27.1
#=GS A0A7W2ESE0_9BURK/508-566  AC A0A7W2ESE0.1
#=GS A0A4S8FBD6_9BURK/522-582  AC A0A4S8FBD6.1
#=GS A0A380TMK6_9PAST/490-551  AC A0A380TMK6.1
#=GS A0A372KAC8_9BURK/508-569  AC A0A372KAC8.1
#=GS A0A1H8IYM7_9BURK/506-567  AC A0A1H8IYM7.1
#=GS A0A2R5FCC5_9PROT/504-565  AC A0A2R5FCC5.1
#=GS A0A172YEP3_9GAMM/512-572  AC A0A172YEP3.1
#=GS A0A0H2V332_SHIFL/487-545  AC A0A0H2V332.1
#=GS A0A6N1X0H1_9BURK/507-568  AC A0A6N1X0H1.1
#=GS A0A240A6H8_SERFI/487-545  AC A0A240A6H8.1
#=GS A0A7U7I8Y3_9PSED/505-565  AC A0A7U7I8Y3.1
#=GS A0A2N7W275_9BURK/508-568  AC A0A2N7W275.1
#=GS A0A840SNE6_9RHOB/500-562  AC A0A840SNE6.1
#=GS A0A0M2WJI3_9BURK/509-566  AC A0A0M2WJI3.1
#=GS A0A0B3BS40_9PSED/504-564  AC A0A0B3BS40.1
#=GS A0A2T4IDA0_9RHOO/537-582  AC A0A2T4IDA0.1
#=GS A0A1S2DEU5_9GAMM/533-594  AC A0A1S2DEU5.1
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