#=GF ID zf-RRPl_C4
#=GF AC PF17026.9
#=GF DE Putative ribonucleoprotein zinc-finger pf C4 type
#=GF AU Coggill P;0000-0001-5731-1588
#=GF SE c_2033 - Hirt RP, Nakjang S
#=GF GA 28.90 28.90;
#=GF TC 29.00 33.10;
#=GF NC 28.80 27.60;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -E 1000 -Z 75585367 --cpu 4 HMM pfamseq
#=GF TP Family
#=GF RN [1]
#=GF RM 24259309
#=GF RT Reduction and expansion in microsporidian genome evolution: new
#=GF RT insights from comparative genomics.
#=GF RA Nakjang S, Williams TA, Heinz E, Watson AK, Foster PG, Sendra
#=GF RA KM, Heaps SE, Hirt RP, Martin Embley T;
#=GF RL Genome Biol Evol. 2013;5:2285-2303.
#=GF RN [2]
#=GF RM 23829473
#=GF RT Genome sequencing and comparative genomics of honey bee
#=GF RT microsporidia, Nosema apis reveal novel insights into
#=GF RT host-parasite interactions.
#=GF RA Chen Yp, Pettis JS, Zhao Y, Liu X, Tallon LJ, Sadzewicz LD, Li
#=GF RA R, Zheng H, Huang S, Zhang X, Hamilton MC, Pernal SF,
#=GF RA Melathopoulos AP, Yan X, Evans JD;
#=GF RL BMC Genomics. 2013;14:451.
#=GF DR INTERPRO; IPR031502;
#=GF DR SO; 0100021; polypeptide_conserved_region;
#=GF CC This is a family of largely microsporidia-specific proteins [2].
#=GF CC One member is annotated as being a ribonucleoprotein [2]. The
#=GF CC family carries two pairs of CxxC residues suggesting that there
#=GF CC is DNA-binding.
#=GF SQ 24
#=GS I3EH17_NEMP3/1-125 AC I3EH17.1
#=GS A0A059EJS2_9MICR/2-99 AC A0A059EJS2.1
#=GS A0A1X0QD39_9MICR/3-110 AC A0A1X0QD39.1
#=GS R0KNU3_NOSB1/1-108 AC R0KNU3.1
#=GS R0MJP0_NOSB1/1-108 AC R0MJP0.1
#=GS A9CS86_ENTBH/4-109 AC A9CS86.1
#=GS A0A059F0Y4_9MICR/2-99 AC A0A059F0Y4.1
#=GS L2GT41_VAVCU/2-107 AC L2GT41.1
#=GS L7JTU2_TRAHO/2-107 AC L7JTU2.1
#=GS Q8SV51_ENCCU/1-108 AC Q8SV51.1
#=GS A0A437ALB9_9MICR/1-97 AC A0A437ALB9.1
#=GS A0A4Q9L787_9MICR/3-110 AC A0A4Q9L787.1
#=GS L2GPX9_VITCO/1-106 AC L2GPX9.1
#=GS H8ZD77_NEMS1/1-125 AC H8ZD77.1
#=GS A0A4Q9LTI6_9MICR/3-110 AC A0A4Q9LTI6.1
#=GS C4V895_NOSCE/14-118 AC C4V895.1
#=GS A0A177EIQ1_9MICR/1-122 AC A0A177EIQ1.1
#=GS A0A0B2UIY6_9MICR/1-108 AC A0A0B2UIY6.1
#=GS A0A0F9YVC3_9MICR/14-118 AC A0A0F9YVC3.1
#=GS A0A1W0E451_9MICR/5-110 AC A0A1W0E451.1
#=GS A0A059EFB0_9MICR/4-70 AC A0A059EFB0.1
#=GS S7W639_SPRLO/4-102 AC S7W639.1
#=GS A0A059EK75_9MICR/2-99 AC A0A059EK75.1
#=GS T0L8F9_9MICR/2-104 AC T0L8F9.1
I3EH17_NEMP3/1-125 .........MKKCPYCFSKKLENLNETVYCDACQSYFR.RTPTELVPIFIENK.EvyrkY.QKISERRILCTVCQERNENENE.kFRAE--DEQRLKLNkpikndtrtlvnsgLCRECVERVNSKLESDKNKYYSAYKS-f.........
A0A059EJS2_9MICR/2-99 ........t-ASCEFCHRTNTIKLNNKIYCNHCEIYIS.-SDKTPYILNLKSS.N....-.----I--PLCNKCNKKKNT--K..IHCMDFKDYLKKLP..............FCKLCLEEKKLDFKYNFFKHTLFYRR-v.........
A0A1X0QD39_9MICR/3-110 ........r-KICQICYSPDIILLDDYLYCEKCEIYYK.MDNNKQKVSCLPIN.Q....S.KQIDF--ILCAKCNHNIKNDTEnvIICRTFRDFYQSFP..............ICSLCKEKNSDFISRLFHNNFLNYKK-e.........
R0KNU3_NOSB1/1-108 .........MTICSYCRKSKLIKSDEYIYCPTCESYFT.QTNVKQKHAYVKIE.D....T.DQITLYGNLCDYCEKKYNTEKY..ITCQTFNDYLYGLN..............FCTKCRIRNLKFLKNSYNKSFLLYKA-k.........
R0MJP0_NOSB1/1-108 .........MTICSYCRKSKLIKSDEYIYCPTCESYFT.QTNVKQKHAYVKIE.D....T.DQITLYGNLCDYCEKKYNTEKY..ITCQTFNDYLYGLN..............FCTKCRIRNLKFLKNSYNKSFLLYKA-k.........
A9CS86_ENTBH/4-109 ........l-KICRTCLSNEIVILSHSIYCKVCNVYYH.VESENQYVSSIPVK.E....F.NCLSI--TLCIQCKSSINENRI..ISCVNYIDFLHKLH..............LCSNCKKTNENFLLNLYYRNFITYKKI..........
A0A059F0Y4_9MICR/2-99 ........t-ASCEFCYRTNTIKLNNKIYCNHCEIYIS.-SDKTPYILNLKSS.D....-.----I--PLCNKCNKKKNT--K..IHCMDYKDYLKKLP..............FCKSCLEDKKLDFKYNFFKHTLFYRR-v.........
L2GT41_VAVCU/2-107 ........l-FTCKFCIRSNLSAYNDLLYCPKCKIYLK.EKDGRLFYHYVPSKiD....G.TFRSLSDLLCAKCRTMNTT---..ITCTNFDDFYKKVQ..............YCDMCKVRGYMVLRNNFYKNLPLCHM-v.........
L7JTU2_TRAHO/2-107 ........s-LTCTFCTRSNLSTYNDLWYCPTCTVYLK.QKNGRLFYHYIPSKiD....G.TIRSLNDILCTKCKTMNTT---..VKCTNFDCFYRKVQ..............YCDTCKARGYMVLRNNFYKNLPRCHRI..........
Q8SV51_ENCCU/1-108 .........MSRCEYCKSRNMLPLNGKYYCEECEIYYI.YKDKKQEYSNLPIE.E....I.GQMTVGNHLCRKCKLKYSGKKS..IACTTFREYFKKLP..............MCKRCKKSNERCIKNAFFKNFILYKT-y.........
A0A437ALB9_9MICR/1-97 ........m--KCHFCSSKNTIKLKKKIYCNNCEIYIT.EHNL---PMLINIE.K....-.----TYQLLCKKCLTIKNR--K..IHCSGFKEYLKKLP..............FCSVCKNTRKNDFKYDFFKHTSFYRK-e.........
A0A4Q9L787_9MICR/3-110 ........i-KECGFCRSKKLVFLLEKIYCEECEVYFK.FKNNKYEACHLPTT.D....InNCIPIRRQICDKCIETDLE-KS..IRCRNFNEYFLKVH..............FCNFCKDKLRLYMKTLFYKRVMLYKQ-q.........
L2GPX9_VITCO/1-106 .........MKQCQFCNSHKTKVLNDTLFCENCEIYFT.LKNGIQLIKSLPIA.E....T.KQRTL--NLCVSCSRRAMKNSS..IKCRTFREYLKRLP..............YCSSCKSLNVVFLKNLFFKNFLLYKKI..........
H8ZD77_NEMS1/1-125 .........MKKCPYCGSKKLDNLTETVYCDACQSYFR.RTKDELVPIFIENK.EvyrkY.QKISERRVLCTVCQERNEMEIE.kLRAE--EEQREKLKrpmkkdkndlifsnLCRECVERVNAKLESDRVKYYPEYRS-f.........
A0A4Q9LTI6_9MICR/3-110 ........i-KECGFCRSKKLVFLLEKIYCEECEVYFK.FKNNNYEACHLPTT.D....InNCIPIRRQICDKCIETDLE-KS..IRCRNFNEYFLKVH..............FCNFCKDKLRLYMKTLFYKRVMLYKQ-q.........
C4V895_NOSCE/14-118 ........t-YKCQYCGTNVIKN-----YCSVCRSHFTiVNNNEQKYLSVEMD.D....L.EFLSISDKLCPLCTRYYKNSKY.iIRSTSFSDYFAKLK..............FCKKCKNDSKKFIRNMFYKNFTLNRR-l.........
A0A177EIQ1_9MICR/1-122 ........m--ECVYCRNTKLTMLNGTCFCSECLSYFK.VDGKTLFPIFVENK.EvytvH.RAVVTKTLLCSICLEREEREYQ..-RRRNEEEHKEQILgkkrhk..steknyLCRECIDRINNKLREDK----------kaviepylay
A0A0B2UIY6_9MICR/1-108 .........MKQCSYCGFRRIVALNSKYYCEECEVYYT.YRNNKQEYSNFPME.E....T.DQIAVKSGLCKKCEPRHESGRC..VCCRTFREYFKKLP..............FCKKCKEKNERCIKNVFFRNFILYKT-h.........
A0A0F9YVC3_9MICR/14-118 ........t-YKCQYCGTNVIKN-----YCSVCRSHFTiVNNNEQKYLSVEMD.D....L.EFLSISDKLCPLCTRYYKNSKY.iIRSTSFSDYFAKLK..............FCKKCKNDSKKFIRNMFYKNFTLNRR-l.........
A0A1W0E451_9MICR/5-110 ........p-KFCQVCLSQQIILLSGSVYCEKCEVYYQ.LENGNQFVAAIPVS.E....I.DQMGP--DLCKKCEGIKKSNRK..IECTSFNDFTKKIK..............LCGKCKSINHSFLKNLYFRNFVLCRK-t.........
A0A059EFB0_9MICR/4-70 ktpyilnlk-----------------------------.--------------.-....-.---SSNIPLCNKCNKKKNT--K..IHCMDFKDYLKKLP..............FCKLCLEEKKLDFKYNFFKHTLFYRR-v.........
S7W639_SPRLO/4-102 ........p-VECKFCCNKNLIFLYNKIFCSKCNIYYH.IENND--WIPTPIH.Q....-.---SILSRLCNKCKNKKGK---..IICSDIEDYIKKSL..............FCKDCKQRVIQSIKYNFIRYNDIYKK-n.........
A0A059EK75_9MICR/2-99 ........t-TSCEFCHRTNTIKLNNKIYCNHCEIYIS.-SDKTPYILNLKSS.N....-.----I--PLCNKCNKKKNT--K..IYCMDFKDYLKKLP..............FCKLCLEDKKLDFKYNFFKHTLFYRR-v.........
T0L8F9_9MICR/2-104 ........s-LKCKFCSSK-IDN----NYCKTCRAHFK.FKNNTQIYTSVEID.K....L.NYSSIQDRLCIKCTKYYATNCV..IYAYSFIDYIKKLK..............FCRSCKKENEKFIRNMFYNNFIMYR--fk........
#=GC seq_cons ..........tpCpaCtspplhhLspplYCppCclYap.hpssp.hhh.l.hc.-....h.p.hsl.t.LCsKCpcppps..p..IpCpsFc-YhcKL...............aCcpCKpcspthl+ssFaKphhhY+p.h.........
//
