KEGG   Prochlorococcus marinus MIT 9312: PMT9312_1155
Entry
PMT9312_1155      CDS       T00297                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pmi  Prochlorococcus marinus MIT 9312
Brite
KEGG Orthology (KO) [BR:pmi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PMT9312_1155
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmi03400]
    PMT9312_1155
Enzymes [BR:pmi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PMT9312_1155
DNA repair and recombination proteins [BR:pmi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PMT9312_1155
SSDB
Motif
Pfam: DNA_ligase_A_M WGR RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: ABB50214
UniProt: Q31A81
Position
complement(1071098..1072192)
AA seq 364 aa
MKNEKISLSFTEGSSDKVYQAELKEVDGGFNVTFQYGRRGKPLQSGTKTKTPATYDDAKK
IYDKLVLSKTSKGYAPEDSSVEYAETEKAGESTDFKPQLLNPINNENLEELFNNFSRVYM
QTKHDGERRGASINNSEIIASNRKGLRVGLQKPIQDALEKLKDGGFIDTEIDSEDMGDHL
VIFDVLKFKGLETKENSFSDRVTYLEKLGEEIKSKKLDNALKVDYPTIADSLEKVKDFVE
SAKSKNEEGVVFKNGDATYNEGRPSSGGNALKLKFVESATLRVSSITEGKRSVSIEINDN
GIWISVGKCTVPANQDIPNPGELIEVDYLYAIKDGALFQPIYKGKRNDLDETAAVISQLK
YKKD
NT seq 1095 nt   +upstreamnt  +downstreamnt
atgaaaaacgaaaaaatatctttatctttcacagagggttcatctgacaaagtttatcaa
gcagaactaaaggaagttgatggtggttttaatgtgacctttcaatatggtcgaagagga
aaacccctccaaagtgggacaaaaacaaaaactcctgctacttatgatgatgcgaaaaaa
atatatgacaagttagtactatcaaaaacctcaaagggatatgcacctgaagatagttca
gttgagtatgcagagacagaaaaagctggagaatctactgactttaaacctcaattatta
aacccgattaataatgaaaatcttgaagaacttttcaataatttttctagagtttatatg
cagacaaaacatgatggagaacgtaggggcgcaagtattaataactcagaaatcattgca
tctaaccgcaaaggtttgcgagtaggtttgcagaaacctattcaggatgcactggaaaaa
ctaaaagacggagggtttatagatacagaaatagattctgaagacatgggggatcattta
gttatctttgatgttctcaagttcaaaggcttggaaactaaagaaaattcatttagcgat
cgtgttacttatcttgagaaacttggagaagaaatcaaatcaaaaaaacttgataatgct
ttaaaagttgattacccaaccattgcagatagcttagaaaaagttaaagattttgtagaa
agcgcaaaatcaaaaaatgaagagggagttgtttttaaaaatggagatgcaacatacaac
gaaggcagaccaagttctggaggaaacgctcttaagcttaaatttgtagaaagtgccacg
ctgcgtgtctcttcaattacggaaggtaagcgttctgtatctatcgaaataaatgataat
ggaatttggatatctgtaggtaagtgtacggttcctgctaatcaagatattccaaatcca
ggcgaattaattgaagtggattatctatatgccattaaagatggtgctctttttcaacct
atttataaaggaaagcgtaatgatctagatgaaactgcagctgtaatttctcagcttaaa
tataaaaaagattaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (65)   

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