KEGG   Pan paniscus (bonobo): 100985727
Entry
100985727         CDS       T02283                                 
Symbol
VPS4B
Name
(RefSeq) vacuolar protein sorting-associated protein 4B isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
pps  Pan paniscus (bonobo)
Pathway
pps03250  Viral life cycle - HIV-1
pps04144  Endocytosis
pps04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:pps00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    100985727 (VPS4B)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    100985727 (VPS4B)
  09143 Cell growth and death
   04217 Necroptosis
    100985727 (VPS4B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pps04131]
    100985727 (VPS4B)
   03400 DNA repair and recombination proteins [BR:pps03400]
    100985727 (VPS4B)
Membrane trafficking [BR:pps04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    100985727 (VPS4B)
DNA repair and recombination proteins [BR:pps03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    100985727 (VPS4B)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_14 RuvB_N AAA_5 AAA_22 IstB_IS21 AAA_25 AAA_18 DUF815 AAA_2 AAA_17 nSTAND3 AAA_33 RNA_helicase AAA_24 PhoH AAA_7 Mg_chelatase ResIII Parvo_NS1 NACHT AAA_28 bpMoxR KAP_NTPase TPR_1 DUF5906 MCM TPR_10 TPR_2
Other DBs
NCBI-GeneID: 100985727
NCBI-ProteinID: XP_003827317
Ensembl: ENSPPAG00000033680
UniProt: A0A2R9B0V5
Position
18:complement(56749439..56782660)
AA seq 444 aa
MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRA
KCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADEKGNDSDGEGESDDPEKKKLQNQL
QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGK
SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLC
GSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL
PEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSAT
HFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSN
TKPTVNEHDLLKLKKFTEDFGQEG
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgtcatccacttcgcccaacctccagaaagcgatagatctggctagcaaagcagcgcaa
gaagacaaggctgggaactacgaggaagcccttcagctctatcagcatgctgtgcagtat
tttcttcatgtcgttaaatatgaagcacagggtgataaagccaagcaaagtatcagggca
aagtgtacagaatatcttgatagagcagaaaaactaaaggagtacctgaaaaataaagag
aaaaaagcacagaagccagtgaaagaaggacagccgagtccagcagatgagaaggggaat
gacagtgatggggaaggagaatctgatgatcctgaaaaaaagaaactacagaatcaactt
caaggtgccattgttatagaacgaccaaatgtgaaatggagtgacgttgctggacttgaa
ggagccaaagaagcactgaaagaggctgtgatactgcctattaaatttcctcatcttttt
acaggcaagagaacaccttggaggggaatcctattatttgggccgcctggaacaggaaag
tcctacttagccaaagctgtagcaacagaagccaacaactcaacatttttttcaatatct
tcctctgatcttgtttctaagtggctaggtgaaagtgaaaaactggttaagaatttattc
caacttgccagagagaacaagccctccattatcttcattgatgaaattgattctctctgt
ggttcaagaagtgaaaatgaaagtgaagccgcacgtagaattaagacggagttcctagtg
caaatgcaaggggttggtgtagacaatgatggaattttggttctgggagctacaaatata
ccctgggttctggattctgccattaggcgaagatttgagaaacgaatttatattcccttg
ccggaaccccatgcccgagcagcaatgtttaaactgcacctggggaccactcagaacagt
ctcacggaagcagactttcgggaacttgggaggaaaacagatggttattcaggggcagat
ataagcatcattgtacgtgatgcccttatgcagcctgttaggaaagtacagtcagctact
cattttaaaaaggttcgcggaccttcccgagctgatcctaaccatcttgtagatgatctg
ctaacaccttgctctccaggtgaccctggtgccattgaaatgacatggatggatgtccct
ggagataaacttttggaaccagttgtttccatgtcggatatgttgcggtcactatctaac
acaaaacctacagtcaatgaacatgacttgttgaaattaaagaagtttacagaagatttt
ggtcaagaaggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (34)   
   Pfam (34)   
All databases (51)   

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