KEGG   Pan paniscus (bonobo): 100988129
Entry
100988129         CDS       T02283                                 
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X2
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
pps  Pan paniscus (bonobo)
Pathway
pps03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pps00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    100988129 (KDM2B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pps03000]
    100988129 (KDM2B)
   04121 Ubiquitin system [BR:pps04121]
    100988129 (KDM2B)
   03036 Chromosome and associated proteins [BR:pps03036]
    100988129 (KDM2B)
Enzymes [BR:pps01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     100988129 (KDM2B)
Transcription factors [BR:pps03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    100988129 (KDM2B)
Ubiquitin system [BR:pps04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   SCF complex
    Target recognizing subunit (F-box)
     100988129 (KDM2B)
Chromosome and associated proteins [BR:pps03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    100988129 (KDM2B)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     100988129 (KDM2B)
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD F-box Cupin_8 JmjC
Other DBs
NCBI-GeneID: 100988129
NCBI-ProteinID: XP_003832407
Ensembl: ENSPPAG00000035060
UniProt: A0A2R9B6K0
Position
12:complement(119027633..119183779)
AA seq 1336 aa
MAGPQMGGSAEDHPPRKRHAAEKQKKKTVIYTKCFEFESATQRPIDRQRYDENEDLSDVE
EIVSVRGFSLEEKLRSQLYQGDFVHAMEGKDFNYEYVQREALRVPLIFREKDGLGIKMPD
PDFTVRDVKLLVGSRRLVDVMDVNTQKGTEMSMSQFVRYYETPEAQRDKLYNVISLEFSH
TKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQTEATNAIAEMKYPKVKKYCLMSVKGCFTD
FHIDFGGTSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDIFLGDRVERCQRIEL
KQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVQPKFRYPFYY
EMCWYVLERYVYCVTQRSHLTQEYQRESMLIDAPRKPSIDGFSSDSWLEMEEEACDQQPQ
EEEEKDEEGEGRDRAPKPPADGSTSPTSTPSEDQEALGKKPKAPALRFLKRTLSNESEES
VKSTTLAVDYPKTPTGSPATEVSAKWTHLTEFELKGLKALVEKLESLPENKKCVPEGIED
PQALLEGVKNVLKEHADDDPSLAITGVPVVTWPKKTPKNRAVGRPKGKLGPASAVKLAAN
RTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTA
VCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLKIKESEGVVNDELPNCWECP
KCNHAGKTGKQKRGPGFKYASNLPGSLLKEQKMNRDNKEGQEPAKRRSECEEAPRRRSDE
HPKKVPPDGLLRRKSDDVHLRKKRKYEKPQELSGRKRASSLQTSPGSSSHLSPRPPLGSS
LSPWWRSSLTYFQQQLKPGKEDKLFRKKRRSWKNAEDRMALANKPLRRFKQEPEDELPEA
PPKTRESDHSRSSSPTAGPSTEGAEGPEEKKKVKMRRKRRLPNKELSRELSKELNHEIQR
TENSLANENQQPIKSEPESEGEEPKRPPGICERPHRFSKGLNGTPRELRHQLGPSLRSPP
RVISRPPPSVSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMHREVWMAVFSYLSHQ
DLCVCMRVCRTWNRWCCDKRLWTRIDLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQ
LSWLINRLPGLRDLVLSGCSWIAVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTD
NRPGQMDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLHLSYCNHVTDQSINLLT
AVGTTTRDSLTEINLSDCNKVTDQCLSFFKRCGNICHIDLRYCKQVTKEGCEQFIAEMSV
SVQFGQVEEKLLQKLS
NT seq 4011 nt   +upstreamnt  +downstreamnt
atggcgggtccgcaaatggggggatctgcagaggatcaccccccacgaaaaagacatgca
gcagaaaagcaaaaaaagaaaacagttatatatacaaaatgctttgaatttgagtcggcc
acacagcgcccgattgaccgccagcgatacgacgagaacgaggacttgtcggacgtggag
gagatcgtcagcgtccgcggcttcagcctggaggagaagcttcgcagccagctgtaccag
ggggacttcgtgcacgccatggagggcaaagatttcaactatgagtacgtacagagagaa
gctctcagggttcccctgatatttcgagaaaaggatggactgggaattaagatgcctgac
cctgatttcacagtccgagacgtcaaactcctagtggggagccggcggcttgtggacgtg
atggatgtgaacacccagaagggcacggagatgagcatgtcccagtttgtgcgttactac
gagacgcccgaggcccagcgggacaagctgtacaacgtcatcagcctagagttcagccac
accaagctggagcacttggtcaagcgtccgactgtggtagacctggtggactgggtggac
aacatgtggccccagcatctgaaggagaagcagacagaagccacgaacgccattgcagag
atgaagtacccgaaagtgaagaagtactgtctgatgagcgtgaaaggttgtttcactgac
ttccacatcgactttggaggcacttccgtttggtaccatgttttccggggtgggaagatt
ttttggctgattcctccaacgctgcacaatttggcgctgtacgaggagtgggtgctgtca
ggcaaacagagtgacatctttctgggagaccgtgtggaacgatgccaaagaattgagctg
aagcagggctacacatttttcatcccttccggttggatccatgccgtctacacccctgta
gactctttggtgttcggcggaaacatcctgcacagctttaacgtgcccatgcagctgcgg
atctacgagatcgaggacaggacgcgggtgcagcccaaattccgttaccccttctactat
gagatgtgctggtatgtcctggagagatacgtgtactgtgtgacccagcgctcccacctc
actcaggaataccagagggagtcgatgcttattgatgccccgaggaagcccagcatagac
ggcttctcttcggattcctggctggagatggaggaggaggcctgtgatcagcagcctcag
gaggaggaggagaaggacgaggagggcgagggcagggacagggcacccaaaccgcccgcc
gatggctccacttcacccaccagcacgccctccgaggaccaggaggccctcgggaagaag
cccaaagcacctgccctgcgattcctcaaaaggactttgtctaacgagtcggaggagagt
gtgaagtccaccacattggccgtagactaccccaagacccccaccggctctcccgccacg
gaggtctctgccaaatggacccatctcaccgagtttgaactgaagggcctgaaagctctg
gtggagaaactggaatccctcccggagaacaagaagtgtgtccccgagggcatcgaggac
ccccaggcactcctggagggtgtgaagaacgtcctgaaggagcacgcggatgatgatcct
agtctggccatcactggggtccctgtggtgacttggccaaagaagactccaaagaaccgg
gctgtgggtcggcccaaggggaagctgggcccggcctccgcggtgaagttggccgccaac
cggacaacggcaggagctcggcggcgccggacgcgatgccgcaagtgcgaggcctgcctg
cggaccgagtgcggagagtgccacttctgcaaggacatgaagaagttcgggggccccggg
cgcatgaagcagagctgcatcatgcggcagtgcatcgcgccagtgctgccccacaccgcc
gtgtgccttgtgtgtggcgaggcggggaaggaagacacggtggaagaggaggaaggcaag
tttaacctcatgctcatggagtgctccatctgcaatgaaatcatccaccctggatgcctt
aagattaaggagtcagagggtgtggtcaacgacgagcttccaaactgctgggagtgtccg
aagtgtaaccacgccggcaagaccgggaaacaaaagcgtggccctggctttaagtacgcc
tccaacctgcccggctccctgctcaaggagcagaagatgaaccgggacaacaaagaaggg
caggaacctgccaagcggaggagtgagtgtgaggaggcgccccggcgcaggtcggatgag
cacccgaagaaggtgccgccggacggcctcctgcgcagaaagtctgatgacgtgcacctg
aggaagaagcggaaatacgagaaaccccaggagctgagtggacgcaagcgggcctcatcg
cttcaaacgtcccccggttcctcctctcacctctcgccgaggccccctctaggcagcagc
ctcagcccctggtggagatccagtctcacttacttccagcagcagctcaaacctggcaaa
gaagataagcttttcaggaaaaagcggcggtcctggaagaacgccgaggaccgcatggcg
ctggccaacaagcccctccggcgcttcaagcaggaacccgaggacgaactgcccgaggcg
ccccccaagaccagggagagcgaccactcccgctccagctcccccaccgcgggacccagc
accgaaggggccgagggcccggaggagaagaagaaggtgaagatgcgccggaagcggcgg
cttcccaacaaggagctgagcagggagctgagcaaggagctcaaccacgagatccagagg
acggagaacagcctggccaacgagaaccagcagcccatcaagtcggagcccgagagcgag
ggcgaggagcccaagcggcccccgggcatctgcgagcgtccccaccgcttcagcaagggg
ctcaacggcaccccccgggagctgcggcaccagctggggcccagcctgcgcagcccgccc
cgtgtcatctcccggcccccaccctccgtgtctccgcccaagtgtatccagatggagcgc
catgtgatccggccaccccccatcagccccccgcctgactcgctacccctggacgatggg
gcagcccacgtcatgcacagggaggtgtggatggccgtcttcagctacctcagccaccaa
gacctgtgtgtgtgcatgcgggtctgcaggacctggaaccgctggtgctgcgataagcgg
ttgtggacccgcattgacctgaaccactgcaagtctatcacacccctgatgctgagtggc
atcatccggcgacagcccgtctccctcgacctcagctggaccaatatctccaagaagcag
ctgagctggctcatcaaccggctgcctgggctccgggacttggtgctgtcaggctgctca
tggatcgcggtctcggccctttgcagctccagttgtccgctgctccggaccctggatgtc
cagtgggtggagggactaaaggatgcccagatgcgggatctcctgtccccgcccacagac
aacaggccaggtcagatggacaatcggagcaagctccggaacatcgtggagctgcgcctg
gcaggcctggacatcacagatgcctccctgcggctcatcatccgccacatgcccctgctc
tccaagctccacctcagttactgtaaccacgtcaccgaccagtccatcaacctgctcacc
gctgttggcaccaccacccgagactccttaaccgagatcaacctgtctgactgcaataag
gtcactgatcagtgcctgtccttcttcaaacgctgtggaaacatctgtcatattgacctg
aggtactgcaagcaagtcaccaaggaaggctgtgagcagttcatagccgagatgtctgtg
agtgtccagtttgggcaagtagaagagaaactcctgcaaaaactgagttag

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (20)   
   UniProt (1)   
   RefSeq(pep) (19)   
DNA sequence (19)   
   RefSeq(nuc) (19)   
Protein domain (7)   
   Pfam (7)   
All databases (67)   

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