KEGG   Rhodopirellula baltica: RB1964
Entry
RB1964            CDS       T00134                                 
Symbol
rpoA
Name
(GenBank) probable DNA-directed RNA polymerase alpha chain
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
rba  Rhodopirellula baltica
Pathway
rba03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rba00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RB1964 (rpoA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rba03021]
    RB1964 (rpoA)
   03400 DNA repair and recombination proteins [BR:rba03400]
    RB1964 (rpoA)
Enzymes [BR:rba01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RB1964 (rpoA)
Transcription machinery [BR:rba03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RB1964 (rpoA)
DNA repair and recombination proteins [BR:rba03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RB1964 (rpoA)
SSDB
Motif
Pfam: RNA_pol_A_CTD TPR_2 TPR_19 TPR_1 TPR_6 TPR_14 TPR_12 TPR_16 TPR_7 ANAPC3 TPR_8 TPR_17 TPR_11 TPR_10 MIT TPR_5 Coatomer_E TPR_9 PknG_TPR
Other DBs
NCBI-ProteinID: CAD72353
UniProt: Q7UWL0
Position
1034475..1035977
AA seq 500 aa
MPPSVGKNWHHNLCVDFLDKFLFLQSTFLQSRSPPDSLSLLSDRCASEPKLAPDKTKMSE
VELEVLDLKQMVLASNSFGPSDVAEIRQAITENYGHFGELRDAVNEMEQDDALTPAGKTK
MGVCQFMLGRFKDASETLSAADGSAMALFYNARCQFELSNFDGAIEGYEQAKTSGYNEDQ
CKIGIAEAKRYQGKIEEAMAILDDIFGPAEQTADYMYQRAATAAQIGGRMEEAINLYQRA
VSTDENHAGALFGLALENDRLGNDDEALRLYERAAKAFPTGIGALINLGVMYEDNGQYDK
AQLCYKRILDCHPDHPRTQLYMKDASATGNMLYDEEAQRRNDRLAQTLNMPVANFELSVR
SRNCLQKMGIETIGDLTRHSEQELLSSKNFGETSLVEIREMLSQKGLSLGQFAGEKKSND
PPVDTSHMSPDEQALLERPIADLNLSVRARKCMTRLQINSIGELIRKTGDDMLECKNFGV
TSLNEVREKLGDLGLKMRGD
NT seq 1503 nt   +upstreamnt  +downstreamnt
ttgccgccgagcgtcgggaaaaattggcatcacaatttgtgcgtcgattttctcgacaaa
tttttgttcctgcagagcacatttttgcagagcagatcgccacctgactccttatccctc
ctttcggatcgctgtgcgagcgagccgaagttagccccggacaaaacgaagatgagcgaa
gtcgaactcgaagttctcgacctgaagcaaatggttctggcgagtaactcgttcggcccc
agcgacgtcgccgaaattcggcaggcgatcaccgaaaactacggacacttcggtgaactg
cgcgacgcggtcaacgaaatggagcaggacgacgccctgactcccgccggcaaaaccaaa
atgggtgtttgccaattcatgctgggccgtttcaaagacgcctcggagaccctctccgcg
gccgacggcagcgcaatggcgttgttctacaacgctcgttgccagtttgaactgtcgaac
ttcgacggggcgatcgaaggctacgaacaagccaagacgtcaggatacaacgaagatcaa
tgcaagattggtatcgcggaagccaagcgttaccaaggcaagatcgaagaagcgatggcg
atcttggacgacatcttcggccccgccgagcagaccgctgactacatgtatcagcgtgct
gcgaccgccgcccagatcggtggacggatggaagaagcgatcaacttgtaccaacgagct
gtgtcgaccgacgaaaaccacgctggtgcgttgtttggtttggcactcgaaaacgaccgc
ttgggcaacgacgacgaagccctccgtctgtacgagcgtgccgccaaggcattcccgacc
ggcatcggtgccctgatcaacttgggcgtgatgtacgaagacaacgggcaatacgacaag
gctcagctttgctacaagcgaatcctggactgtcaccccgatcaccctcgtacgcagctg
tacatgaaggacgcttcggcgaccggcaacatgctgtacgacgaagaggcccaacgtcgc
aacgatcgtttggctcaaacgttgaacatgcccgttgcaaacttcgagctcagcgttcga
agccgcaactgcctgcagaagatgggcatcgaaacgattggcgatttgacccgccacagc
gaacaagaattgctctcgagcaagaactttggcgaaaccagcttggtcgaaattcgcgaa
atgctgtcgcagaaaggtttgtcgctcggccagttcgctggcgagaagaaatccaacgac
ccgcctgtcgacacttcgcacatgtcgcccgacgaacaagcgttgctggaacgtcccatc
gcagacctcaacttgtccgttcgtgctcgcaagtgcatgacccgtttgcaaatcaactcc
attggcgagctgatccgcaagaccggcgatgacatgcttgagtgcaagaactttggtgtg
accagtttgaacgaagttcgtgaaaagctgggtgacctcggattgaaaatgcggggcgac
tga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (53)   

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