KEGG   Rhizobium etli CFN 42: RHE_CH00617
Entry
RHE_CH00617       CDS       T00317                                 
Name
(GenBank) putative DNA ligase protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ret  Rhizobium etli CFN 42
Pathway
ret03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ret00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RHE_CH00617
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ret03400]
    RHE_CH00617
Enzymes [BR:ret01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RHE_CH00617
DNA repair and recombination proteins [BR:ret03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RHE_CH00617
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase NdhM
Other DBs
NCBI-ProteinID: ABC89433
RhizoBase: RHE_CH00617
UniProt: Q2KCK3
Position
complement(635560..637539)
AA seq 659 aa
MALETCQAKRNFKLAPKSKDGKAVAAKRPAAKARSPAPRERDWPKGARKGAMPDFIEPAL
AKLKPKPPAGDRWIHEIKFDGYRLQVRVENGKIRMLTRSGLDWTEKFGREVLEAFAALPV
QSAAIDGEIVVERDTGASNFSALQHDLSEGRNDRFVFYAFDLLHFDGYNLVDVALIDRKQ
LLESLLPDDNDKLRYSAHFNESGGLVLDHACRLSLEGMISKLRDSKYRSGRKGDWIKSKC
SHRQEFVIGGYVPSTSMKNAIGSLAVGYYQGGELKYVGRVGTGYTAATAQMLYEKLSRLT
QNENSFDDKLTSEERRGLIYVKPQLVGEVEFRAWSADGNLRHAAFRGLREDKPAKDVTRE
MEKTTAPLLPKSAVTLTHPDRIYWPDEGVTKEGLANYYAQVWRFMAPYVVNRPLALLRLP
DGINGRQRFFQKHAWKGMNPHIEEITDPKDKQGEKLLRITDFDGIVALVQSAVLEIHPWG
ASTDNWEKPDMITMDLDPDDEVAWADVIAAAYELKERLEAEGLAAFVKTSGGKGLHVVTP
LTPKAGWAEVKGFAKWLADSMSADRPDRYLATATKAKRTGRIFIDYLRNGRGNTAVAPYS
ARARPGAAVSMPLEWSELTIEVGPAYFTVDNAPTRLDALPRDPWDGFFAAAKPLEKKKR
NT seq 1980 nt   +upstreamnt  +downstreamnt
atggccctcgaaacctgtcaggcgaagcgcaatttcaaactcgctcccaaatcgaaagac
ggcaaggcggttgccgccaaaagaccggcagcaaaggccagatccccggcaccacgagaa
cgcgactggccgaagggtgcgcgcaagggcgcaatgcccgatttcatcgaaccggcgctt
gccaagctgaagccgaagccgccggcgggtgaccgctggattcacgaaatcaagtttgac
ggctaccggctgcaggtcagagtcgagaacggcaagatcagaatgttgacccgcagcggc
ctcgactggacggagaaattcggccgcgaggtgctagaggcctttgccgccctgccggtg
caatcggcggcgatcgatggcgaaatcgtcgtcgagcgcgataccggcgcctcgaacttc
tcggcacttcagcacgatctgagcgagggccgcaacgatcgcttcgtcttctatgccttc
gatcttctccacttcgacggctacaacctcgtcgatgtggcgctcatcgatcgcaagcag
ctgctcgaaagcctgctgcccgacgataacgacaagctgcgttacagcgcgcatttcaac
gaaagcggcggcctcgtgctcgaccatgcctgtcggctcagcctcgaagggatgatttcc
aaactgcgcgatagcaaatacaggtcgggacgcaaaggtgattggatcaaatcgaaatgc
tcgcaccggcaggaattcgtcatcggcggctacgtgccgtcgacatcgatgaagaatgcg
atcggctcactggcggtgggctattaccaaggcggtgaactcaagtatgtcgggcgcgtc
ggcaccggatatacggcggcaaccgcacagatgctctatgagaaactgtcgcgtctgacg
cagaacgagaattcattcgacgacaagctgacgtcagaggagcggcgcgggctgatctat
gtcaagccgcagctggtcggcgaggtcgagttccgagcctggtcggccgacggcaatctg
cgccatgcggcctttcgcggcctgcgcgaagacaaacctgccaaggacgtgacacgcgag
atggaaaagaccacagcgcctctcctgccgaaatcggcagtgacactcacccatcccgac
cgcatctattggccggacgagggtgttaccaaagaggggctggcgaattattatgcccag
gtctggcgcttcatggcgccctatgtcgtcaaccgccccttggcgcttctgcgcctgccg
gacggaatcaacggccggcagcgctttttccagaaacatgcctggaaaggcatgaatccg
catatcgaggagatcaccgaccccaaggacaagcagggggagaagctgctgcggataacc
gatttcgacggcatcgtggccctggtgcaatcggccgtgcttgaaatccacccctggggt
gcttcgaccgacaattgggaaaagcccgatatgatcaccatggacctcgatcccgatgac
gaggtggcgtgggcagatgtgatcgccgccgcttacgaattgaaggagcggctggaggcc
gaaggcctcgccgccttcgtcaagacctcgggcggcaaggggctgcatgtggtgacgccg
ctcacgccgaaggccggctgggccgaggtgaagggtttcgccaaatggcttgccgacagc
atgtccgccgaccgtccggaccgttatctggcgacggcgacgaaggccaagcgcacgggg
aggatcttcatcgactatctccgcaacggccgcgggaatacggcggtcgcgccctattcg
gcacgggcacggccgggtgcggcggtctcgatgccgctggaatggagcgaactcaccatc
gaggtcggaccggcctatttcacggtggacaatgcgccgacccggctcgacgcgctgccg
cgtgatccctgggacggatttttcgccgcggcgaaaccgttggaaaagaagaagcggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (32)   

Download RDF
DBGET integrated database retrieval system