KEGG   Rhizobium etli CFN 42: RHE_PE00251
Entry
RHE_PE00251       CDS       T00317                                 
Name
(GenBank) putative DNA ligase (ATP) protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ret  Rhizobium etli CFN 42
Pathway
ret03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ret00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RHE_PE00251
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ret03400]
    RHE_PE00251
Enzymes [BR:ret01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RHE_PE00251
DNA repair and recombination proteins [BR:ret03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RHE_PE00251
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: ABC93686
UNAM_e: RE1PE0000251
RhizoBase: RHE_PE00251
UniProt: Q2K0P1
Position
p42e:281001..282065
AA seq 354 aa
MTRSRRPSAPLLRDSSSSIQSRPVRRRDPDQPNLPFDAMPSRVEPCLALLKQTVPQGPDW
LYEVKWDGYRLALHIEPKGIRILTRGGHDWTRRFPTIAARARELGVSSCILDGEAVVLDE
EGRSDFGALQRSLGGRGGKRISTESIFYAFDLLYLDGHDLTRTELSVRRHLLEDLIPAAD
GGAIRFSQELDLGGEELLEHACRLGMEGIIAKRTDSPYRSGRLGDWQKIKCVQSESFMIV
GYEESASTRGGLGSLLLAGRKGHDWIYVGSVGTGFNRTEAEYLRKTLNRLQTKKPIVPLK
GKRLVFSQPTLIAEIEFRGWTREGSLRHPSYKGLREIQDNAAVFDMADGPAAIR
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgaccagatcacggcgcccctccgcccccctccttcgcgactccagttcttcgatacaa
tcgcgacctgtccgtcggcgtgatccggaccagccaaacctgccgttcgatgcaatgccg
tccagagtggagccctgcctggcgctgctgaagcagacggtgccacaagggccggattgg
ctttatgaggtgaagtgggacggctaccgattggcgctccacatcgagccaaagggcatt
cgcattctcactcgtggcggccatgactggacccgtcgatttccgacgatcgccgcgcgg
gcaagagaactcggtgtgtcgagctgcattctcgacggagaagccgtcgtcctcgatgaa
gagggtcgctcggacttcggagcgttgcagcgctcgctcggcggcaggggcggcaagcgg
atctcgaccgaatccatattctacgccttcgatctgttgtatctcgacggtcacgacctg
acgcgcacggaactgtcggtgcgccgtcatttactggaagatctgatccccgcggccgac
ggtggcgccattcggttctcgcaagaactggatttgggtggcgaggaactgctcgagcac
gcatgtcgtctgggcatggaaggcatcatcgcaaagcgcacggacagtccttaccgcagt
ggccgcctcggggattggcagaagatcaaatgtgttcagagcgaaagcttcatgatcgtc
ggttacgaggaatccgccagcacccgcggcgggctcggcagtctgttgcttgcgggtcga
aagggtcacgactggatctatgtcgggtccgtcggcacggggttcaatcgaaccgaggcg
gaatatttgcgcaagacgttgaaccgcctccaaacgaaaaaaccgatcgtgccgctgaaa
gggaagcggcttgtcttttcccagccgaccctcatcgctgaaatcgagtttcgcggctgg
acgcgtgagggcagcctacgccacccctcatataaggggctgcgcgagatccaggataat
gctgccgtcttcgatatggctgatggcccggctgcgatcagatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
   UNAM_E (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system