KEGG   Sinorhizobium fredii NGR234: NGR_c27850
Entry
NGR_c27850        CDS       T00888                                 
Name
(GenBank) putative ATP-dependent DNA ligase protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rhi  Sinorhizobium fredii NGR234
Pathway
rhi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rhi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    NGR_c27850
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhi03400]
    NGR_c27850
Enzymes [BR:rhi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NGR_c27850
DNA repair and recombination proteins [BR:rhi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     NGR_c27850
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: ACP26532
UniProt: C3MIG9
Position
2901362..2903959
AA seq 865 aa
MAARSAPLSEYNRRRDFTKTREPKGAVAPASGDRKRFLVQKHDATRLHYDFRLEWEGVLK
SWAVTRGPSLNPEDKRLAIRTEDHPLAYGDFEGTIPEGEYGGGTVMLWDTGWWEPEGDPS
KGLKKGKLSFRLHGSRMKGGWALVRMRPRDGEKRENWLLVKETDEIASEEGESLIKENVT
SVATGRTMDEIAGGKGEKRARVWHSNKSTAANLKAGAIAGNDNPRKRQARKSSGKLPAFK
APQLATLVTKAPAGETWLNEAKFDGYRLICAIGGGAVRCYTRNGLDWTEKFPAIAAALAE
LDCKSALIDGEVVALSDAGSSFSALQKALKTGASTRLYAFDLIELDGKDLGRAPLIDRKE
KLRGLLDSLGTTATVQYSEHVQGNGEHVLAAICKAGQEGIIAKEAKAPYRSGRTRSWLKV
KCTKRQEFVIGGYTPSSKKGRPFASILVGTFEGGKLIYRGGVGTGFGEKVMEELAAAFAK
RSRETPPFDSVPRERMRKAVWLKPDLVAEVDFAEFTADGHVRHGSFEGLREDKEAKAVKL
ETAKPTGAASKAAKGKPSANTGKASSPKGDTDVLGVQISHPDRILFEGQGITKIDLARYY
AVVADRMLTFAADHPVSLVRCPQGGQRHCFFQKHTNDAFPEAIREVPITESSGETENYMY
VHDAKGLVAAVQMGTLEFHIWGATIDKLETPDRLVFDFDPDPSVDFTTVKNAARALRDEL
ADIGLQSFALVTGGKGVHVVVPLVRRASWDDAKSFAKAVAQNIADRDPDHFVATMSKAKR
KGRIFIDWLRNERGATAIAPYSSRAREGGPIATPVGWDELERLSGANTFRIGDILERIEA
DTDPWRDIGKVKQSLTKKMMDSVIK
NT seq 2598 nt   +upstreamnt  +downstreamnt
atggccgcgcgaagtgcaccgctttccgaatacaatcgacgccgcgattttaccaagacg
cgcgaaccgaagggcgcggtcgccccggcaagcggcgacaggaagcgctttctcgtccag
aagcacgacgcgacccggctgcattacgatttccgtctcgaatgggaaggcgtcctgaag
agctgggcggtcacccgcggtccaagcctcaatccggaggacaagcgcctcgccatccgt
accgaggatcaccccctcgcctatggcgacttcgagggcacgatcccggaaggagagtat
ggcggcggcacggtgatgctctgggacaccggctggtgggagccggaaggtgacccgtcg
aaaggtctgaagaagggcaagctttcgttcaggctgcatggcagccggatgaagggcggc
tgggcgctggtgcgcatgcggccgcgcgacggcgagaagcgcgaaaactggctgctcgtc
aaggagacggacgagatagcctccgaggaaggcgagagcctgatcaaggagaacgtcacc
agcgtggcgaccggccgcacgatggacgagattgccggcggcaagggtgaaaaacgggca
cgcgtctggcattccaacaaaagcacggccgccaatctgaaggccggtgcgatcgccggg
aacgacaaccctcgcaagcgtcaggcacgaaaatcctcgggcaagctgcccgccttcaag
gctccgcagctcgccacgctggtgaccaaagcacccgccggcgaaacgtggctgaacgaa
gccaagttcgacggttaccgcctgatatgcgccatcggtggcggcgctgtccgctgctac
acccgcaatggcctcgactggaccgagaagttcccggcgattgcggccgcccttgccgag
ctcgattgcaaatccgccctgatcgacggcgaggtggtggcgctgtcggacgcgggatca
agcttttcggcgctgcagaaggcgctgaagaccggcgccagcacgaggctctacgccttc
gacctcatcgaactcgacggaaaggacctcggccgcgcgccgctcatcgaccggaaggaa
aagctgagaggtctgctcgactcgctcggtaccacggcgaccgtccagtacagcgagcac
gttcagggcaacggggagcatgtgcttgcggcgatatgcaaggccggccaggagggtatc
atcgccaaggaagcgaaggcgccctatcgcagcggccgcacccgaagctggctcaaggtc
aaatgcaccaagcgtcaggagttcgtcatcggcggctatacaccctcatcgaagaaaggg
cggccgttcgcctccattctcgtcggtactttcgagggcggcaaattgatctatcggggc
ggcgtcggtaccggcttcggcgaaaaggtgatggaggaactcgctgccgcctttgcaaag
cgcagccgcgagacgccgccgttcgacagcgtgccacgagaaagaatgcgaaaagcggtc
tggctgaagccggatctggtggcggaagtggatttcgccgaattcaccgccgacggacat
gtccgccacggctcgttcgagggattgcgcgaggacaaggaggccaaggccgtgaaactg
gaaacagcgaaaccgacaggcgccgcgtcgaaagccgcgaagggcaagccctcggccaat
accggcaaggcgtcgtcgcccaagggcgacaccgatgtcctcggcgtccagatctcgcat
cccgaccgcatcctcttcgaaggtcagggtatcaccaagatcgatcttgcccgctactac
gccgtcgtcgccgacaggatgctgaccttcgccgccgaccatcccgtctcactggtccgc
tgcccccagggcgggcagcggcactgcttcttccagaaacatacgaacgacgctttcccg
gaggcgatccgcgaagtgccgatcaccgagtcctcgggcgaaaccgaaaactacatgtat
gtccatgacgccaagggcctcgtcgccgccgtgcagatgggcacgctcgagttccacatc
tggggcgcgacgatcgacaagctggaaacgcctgaccggttggtcttcgatttcgacccc
gatccgagcgtcgacttcacgaccgtgaagaacgccgcccgcgccctgcgcgacgagctg
gcggacatcggtctgcagtccttcgcgctggtgaccggcggcaaaggcgttcacgtcgtc
gtgccgcttgtccggcgagccagttgggacgacgcgaagagtttcgccaaggccgtggcg
cagaacatcgccgatcgcgatcccgatcatttcgttgccaccatgtcgaaggcgaagcgc
aaggggcggatcttcatcgactggctgagaaacgagcgtggcgccacggcgatcgccccc
tattccagccgcgcccgcgaaggcgggccgatcgccacgccggtcggttgggacgagttg
gaacggctgagcggggccaacaccttccgcatcggcgatatcctcgagcgcatcgaagcg
gacaccgacccgtggcgcgatatcggcaaggtcaagcaatcgctgacaaagaagatgatg
gattcggtcataaaatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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