KEGG   Rattus norvegicus (rat): 100360750
Entry
100360750         CDS       T01003                                 
Symbol
Lsm6l1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100360750 (Lsm6l1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100360750 (Lsm6l1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    100360750 (Lsm6l1)
   03041 Spliceosome [BR:rno03041]
    100360750 (Lsm6l1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100360750 (Lsm6l1)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100360750 (Lsm6l1)
Spliceosome [BR:rno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100360750 (Lsm6l1)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 100360750
NCBI-ProteinID: XP_017454452
RGD: 2321508
Ensembl: ENSRNOG00000030374
UniProt: A6IYJ3 D3ZG07
Position
13:44666286..44668849
AA seq 80 aa
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
GDAFIRGNNVLYISTQKRRM
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagtctgcggaagcaaacccctagtgacttcttaaagcagatcatcgggcgcccagtt
gtggtgaaattaaactctggcgtggattaccgaggggtcctggcctgcctggatggctac
atgaatatagcattggaacagacagaggagtatgtaaacggacagctgaagaataagtat
ggagacgcattcatccgcggaaacaatgtgctgtacataagtacacagaagaggcggatg
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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