KEGG   Rattus norvegicus (rat): 100910202
Entry
100910202         CDS       T01003                                 
Symbol
Crnkl1
Name
(RefSeq) crooked neck-like protein 1
  KO
K12869  crooked neck
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100910202 (Crnkl1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    100910202 (Crnkl1)
   03036 Chromosome and associated proteins [BR:rno03036]
    100910202 (Crnkl1)
Spliceosome [BR:rno03041]
 Complex B
  Other components
   Prp19-related factors
    100910202 (Crnkl1)
 Complex C
    100910202 (Crnkl1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Other centrosome duplication proteins
     100910202 (Crnkl1)
SSDB
Motif
Pfam: HAT TPR_14 TPR_19 Suf TPR_16 TPR_17 U3_assoc_6 Mad3_BUB1_I
Other DBs
NCBI-GeneID: 100910202
NCBI-ProteinID: NP_446249
RGD: 620507
Ensembl: ENSRNOG00000010587
UniProt: P63155
Position
3:complement(153764718..153807973)
AA seq 690 aa
MAASTAAGKQRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELN
DYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLK
YAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQP
EEQAWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHARKVYER
AVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKK
FGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANV
PPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQ
FEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCT
SWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRQ
LLQRTQHVKVWISFAQFELSSGKEGSVAKCRQIYEEANKTMRNCEEKEERLMLLESWRSF
EDEFGTVSDKERVDKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLLAM
AKLWKKQQQEREAAEQDPDKDIDESESSSF
NT seq 2073 nt   +upstreamnt  +downstreamnt
atggcggcttccacggcagccgggaaacagcggattcctaaagtggccaaggtgaagaac
aaagcgccagcagaggtgcagataaccgcagagcagctcttaagggaggctaaagaaaga
gagctcgagctcctcccacccccacctcagcagaagatcacagacgaggaagaactaaac
gattacaaactacggaaaaggaagactttcgaagataatataagaaaaaacagaactgtg
attagcaactggatcaaatacgcacaatgggaggaaagtctgaaggaaattcaaagggcc
cgatccatatacgagcgtgctttagatgtcgactaccgaaatatcacactctggctgaaa
tatgcagaaatggaaatgaagaaccgccaggtcaaccatgcccgaaatatctgggaccgt
gccataacaaccctgccgcgagtcaaccagttctggtacaaatacacgtacatggaggag
atgctgggcaatgttgccggtgctcgtcaggtgtttgagcgctggatggaatggcagcct
gaggagcaggcctggcactcctacatcaacttcgagctgagatacaaagaggtggagcgg
gcccgcaccatttatgaacgctttgtgctcgtgcaccctgctgtgaagaactggatcaag
tacgctcgatttgaagagaagcatgcgtattttgcccatgcgcggaaagtctacgagaga
gcagttgagttttttggggatgagcatatggacgaacacctctatgtggcctttgctaaa
tttgaagaaaatcaaaaagaatttgaaagggtacgagttatctacaaatatgccctggat
aggatttccaagcaagaggcccaagagctctttaaaaactataccatctttgagaagaag
tttggtgaccggaggggtatagaagacatcatcgtgagcaaacggagattccagtatgaa
gaagaagtgaaggctaatccacacaattatgatgcatggtttgattatttacgcttggtg
gaaagtgatgcagaagcggacactgtgcgggaagtctatgagcgagccattgccaatgtg
ccacccatccaggagaagaggcactggaaacgctacatctacctctgggttaactacgca
ctctatgaagagctggaggccaaggatcctgagaggacaagacaggtgtatcaagcatct
ttggaactaattcctcacaaaaagttcacgtttgccaaaatgtggttatattacgcacag
tttgaaataagacagaaaaatctgccatttgccagaagagctttgggaacttccataggc
aaatgtcccaagaacaagttattcaaaggttacatagaactggaactgcagcttcgagaa
tttgacagatgcaggaagctttacgaaaagtttttggaatttggacctgaaaattgtacc
tcgtggattaagtttgcagaattagaaacaatccttggtgatattgagagagctcgggca
atctatgaattagccatcagccagccacgcttggatatgccagaggtactttggaaatca
tatattgattttgagattgagcaggaagaaactgagagaacacgaaatctttaccgacag
ttgcttcagcgaacacagcacgtcaaggtatggatcagttttgctcagtttgaattatct
tctgggaaagaaggaagtgtggctaaatgcagacagatttatgaagaagctaacaaaacc
atgagaaactgtgaagaaaaagaagagaggcttatgttgctggagtcctggcgaagtttc
gaagatgaatttggaacagtatcagacaaggagagagtagacaaactcatgccagaaaag
gtcaagaagagaagaaaggtccaggctgacgatgggtctgatgccggatgggaagagtac
tatgactacatctttccagaggatgctgccaaccagcctaacctcaagctgctggcgatg
gccaagctttggaagaaacagcaacaagaaagagaagctgccgaacaggatccagataag
gacattgatgagagtgaatcctcatctttttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (27)   

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