KEGG   Rattus norvegicus (rat): 100912526
Entry
100912526         CDS       T01003                                 
Symbol
Rtl9
Name
(RefSeq) retrotransposon Gag-like protein 9 isoform X1
Organism
rno  Rattus norvegicus (rat)
SSDB
Motif
Pfam: Retrotrans_gag DUF4939
Other DBs
NCBI-GeneID: 100912526
NCBI-ProteinID: XP_003752171
RGD: 6486824
Ensembl: ENSRNOG00000049853
UniProt: M0R6H3
Position
X:111470972..111517356
AA seq 1373 aa
MADMSIPLHSLRFNNMMKEESGDPQNRGATFPRPMTETRAEVQILHSQLQLPTVSTSTSD
PEGTSTQLTTSPAFDSLSTPLMGASHSGTVSPPLMSASDSGTLSPLLMTASDSGTLSPLL
MPVSDSGTLSPLLMPTSDSGTLSPLLSTSDYGLMSPGMMTIPDFGTMSTSLMAAPDSAEM
SPLAMPVPSAGVMSAPIMSTSPSEASLMLGSDPGEMSPLLIPDMNPGVTSTPPMTAPGSE
AMSPLQITDEDTEAMSKVLMTALASGEISSLLMSGTDSEVISSLIMSALASGETSTQPTN
PQDSEGIPSVLMPGSDSGVMSSLPMPASGSGAMPAPLLSIPDAGEITLPKPVPDAEAMSP
LLMTALTSTVMPSQLMSASGSGVMSPDVTQNINSEVMTAPPLRVAASGLMSTLPTRTSDT
EAAPIQLMRVPASGNMSTSQKTVPVSGSMSTPLMAVSSPVAMFTEEMSNTTSGMMSTHLT
MPQTSGMMPIGFMKATANGAVSAQQMRGSASGMMPTQPVIATASEIMSVSQSTVPTSGSV
STQKTRAPVSGPMSTTQIRTTASGLTSTPQMKATASGTMSIPLMTAKTSGSASTLLMRDT
ASGVISVPQMRAPSSGSLSKPLMTSKASGMFMQQMTTAAFGATPTSLIRDTASGGLSMPQ
MTDPASGGMSTLLTRATASGATSTSQMTATTSGGMSMLQTRLSGPGATATSLMRATASEM
IPSQPVNMQDSGGVAIPLMRPVALGGMQMRSQGSGTMSTPLLRASDSSEMSTLLTKAPSS
GERPLLLMRPPASGEIVPPPRTPVYGTISAPHMTTTASGVMTMSPMKASVPASESTALQR
STDSGGMSTPLMRTAVSRTKPIPQMMTTACGDVCPCPVRAAATAGISPSPVRPLASSTVS
TPLRRPSDGAGTAELERVLGPGIMSSAQLAAMTSGEMSKPLMRASAPGTTPMPLMSPMTS
GEMSMPLMKTMPSGTMSTLQTKVMSSRATSLPQPINAASGGIANPPLRAPASGAVSTPLM
RVSGSGMMPMPLLRATASGGISVPQVTAPSSGDVSSPLLRAPTPGIMSTPQTAFGMTPAL
NIKVTDSGEASTSHTRVTAPGYKSTPHTTSTVPEVKTPPPKEVPSFGMLTPALCYLLEEQ
EAARGSSSVEEDEEEIDEEKQMKGFLDDSEKMAFLVSLHLGAAERWSILQMEVGNPVSSE
NKAFLRRSQGLYDSLSEIDILSAVLCHPKQGKKSVRQYATDFLLLARHLSWSDAILRTRF
LEGLSEAVTTKMGRIFLKVAGSLKELIDRSLYTECQLAEEKDSSGNASQVVPTACKRNNE
EAMENELGCQQQTEEHQHVPKRCYYLKEHGDPQESLHDHLRQSAGLPKAPTNK
NT seq 4122 nt   +upstreamnt  +downstreamnt
atggcagatatgtcaataccattgcattcattacgattcaacaacatgatgaaagaggaa
agtggtgaccctcaaaacaggggggcaactttccctagaccaatgacggagaccagagca
gaggttcaaatcctgcattcacagttgcagttgcctactgtctcaacttcaacctcagat
cctgaagggacatctacacagctgacgacatcgccagcctttgacagtctgtctacacct
ctcatgggagcgtcacactctgggacagtgtccccaccactgatgtcagcctcagactct
gggacactgtccccattgctaatgacagcctcagattcaggaacactgtccccacttcta
atgccagtctcagactctgggacactgtctccactgctaatgccaacctcagattctgga
acactgtccccattgttgtctacttcagactatgggttaatgtctccagggatgatgaca
attcctgactttgggacaatgtcaacatcactaatggcagccccagattcggcagagatg
tcaccactggcgatgccagttccatccgctggagtgatgtctgcacctataatgagcact
tcaccttctgaggcatcgttaatgctagggtcagatcctggtgagatgtcaccactcctg
attccagatatgaaccctggagtgacatccacaccaccaatgacagctccaggctcagaa
gcaatgtccccattgcaaattaccgatgaggacacagaagcaatgtccaaagtgttaatg
actgccctagcttctggagagatatcatccctgttgatgtcaggcacagactctgaagtg
atatcatccctgataatgtcagccctagcctctggagaaacatcgacccagccaacaaac
cctcaagactctgaagggataccttctgtgctcatgccaggctcggactctggagtcatg
tcttcactgcctatgccagcttctggctctggagcaatgcctgcaccacttctgtccatc
ccagatgctggagaaatcacattaccaaagccggtcccagatgctgaggcaatgtcccca
ctgttaatgacagccctcacctctacagtgatgcccagtcaactgatgtcagcatctggt
tctggagtgatgtccccagatgtaacacaaaatatcaactctgaggtcatgactgctcca
ccattaagagttgcagccagtggattgatgtccacactacccacaagaacttctgataca
gaggcagcacccatccagctaatgagagtccctgcctcaggaaatatgtctacatcacaa
aagacggttccagtctctggatcaatgtccactccactgatggctgtctcaagccctgta
gcaatgttcacagaagaaatgtcgaacacaacctctggtatgatgtctacacatttaaca
atgccccaaacatctggaatgatgcctataggttttatgaaggccacagcaaatggagct
gtctctgcacagcaaatgagaggttcagcttctgggatgatgcccacacagccagttata
gctacagcctctgaaataatgtccgtgtcacaatcaacagtcccaacctctgggtcagtg
tccacacagaaaactcgagctcctgtctctggaccaatgtctacaacccaaataagaacc
acagcctcaggattgacatctacaccacaaatgaaagccacagcctctggaacaatgtct
atcccactaatgacagccaaaacctctggatcagcatccacactgttaatgagagacaca
gcctcaggagtgatatccgtgccacagatgagagctccaagctctggatcattgtccaag
ccactaatgacatccaaagcttctggaatgttcatgcagcaaatgacaactgcagctttt
ggagcaacacctacatcactaataagagacacagcttctggaggtctgtctatgccacag
atgacagatccagcctcaggaggcatgtccacactgctaacgagagccacagcttcggga
gcaacgtctacatcacagatgacagccaccacctctggaggcatgtccatgcttcaaaca
agactctcaggtcctggagcaacagccacatcactaatgagagccacagcctctgagatg
atacctagtcagccagtgaacatgcaagactctggaggggtggccataccactcatgaga
cctgttgccttgggagggatgcaaatgagatcccagggctctggaacaatgtccacaccc
ctcttgagagcctcagactcatcagagatgtctacattgctcacaaaagccccatcctct
ggggagcggcctctgctactaatgagacctccagcatctggggagatagttccacctcct
agaaccccagtttatgggacgatatctgctccacacatgacaaccacagcctcaggagtg
atgacgatgtctcctatgaaggcttctgtccctgcatcagagtcgacagctctccagaga
tccacagattcaggagggatgtccacaccactgatgagaacagcagtttctagaacaaag
cctatcccacaaatgatgaccacagcttgtggagacgtgtgtccgtgcccagtgcgagct
gcagccactgcagggatctctccatcaccagtcagaccactagcttcttcgaccgtgtct
acaccacttaggagaccctctgatggagctgggaccgcagagttagagagagttctaggc
cctggaattatgtcctctgcacaattggcagctatgacctcaggagagatgtccaagcca
ctgatgagggcttcagcccctggaaccacacccatgcctttgatgtcccccatgacttct
ggagagatgtctatgccactaatgaaaaccatgccttctgggacaatgtcaactctacaa
accaaagtcatgagctctagagctacatctttaccacagccaataaatgcagcttctggg
ggaatagctaatcccccactgagagccccagcctctggagcagtgtctacaccacttatg
agagtctcgggttcaggaatgatgcccatgcctctactgagggctacagcctcaggagga
atatctgtgccacaagtgacagctccaagctctggagatgtgtcctcaccactattgagg
gccccgacacctggaataatgtccacaccacaaacagcctttggaatgacacccgctctg
aatatcaaagtcacagactcaggagaggcatctacctctcacaccagagtaacagcccct
ggatacaagagcacaccacacacaacaagcacagtccctgaagtgaagacgccaccacca
aaggaagtgccgtcctttggtatgttgaccccggcactctgttacctcttagaagagcaa
gaagcagcccggggctcatcctcggtggaggaagatgaagaggagattgatgaggagaaa
caaatgaagggttttttagatgattctgagaaaatggcatttctagtgtcgcttcatctg
ggggcagcagagagatggtccatcttgcagatggaagtaggaaaccccgtatccagtgaa
aataaagctttcttgagaagatcacagggcttatatgactccctgtctgagatagacatc
ctaagtgctgttctttgccatcccaagcagggcaaaaagtcagtaaggcagtatgccact
gacttcctgctgctggcccgacatttgtcttggtctgatgccattctacggaccaggttt
ctggaaggactctcagaagctgttaccaccaaaatgggccgtatcttcctgaaggtggcc
ggcagcctgaaggagctgatagataggtctctgtacaccgagtgccagctggcggaagag
aaggattcctcaggcaatgcaagccaagttgtgccaacagcctgtaagcgaaacaacgag
gaggccatggagaatgaactgggctgtcagcagcagactgaggagcaccagcatgttccc
aaacgctgttactacttgaaagaacatggagacccccaggaaagtcttcatgaccacctt
cgacagagtgcaggccttccgaaggcccctaccaacaagtag

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