KEGG   Rattus norvegicus (rat): 103694328
Entry
103694328         CDS       T01003                                 
Symbol
Atxn1l
Name
(RefSeq) ataxin-1-like
  KO
K23616  ataxin 1/1L
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04330  Notch signaling pathway
rno05017  Spinocerebellar ataxia
rno05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    103694328 (Atxn1l)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05017 Spinocerebellar ataxia
    103694328 (Atxn1l)
   05022 Pathways of neurodegeneration - multiple diseases
    103694328 (Atxn1l)
SSDB
Motif
Pfam: AXH ATXN-1_C
Other DBs
NCBI-GeneID: 103694328
NCBI-ProteinID: NP_001388040
RGD: 9319286
Ensembl: ENSRNOG00000038766
Position
19:complement(54609852..54621024)
AA seq 679 aa
MKPVHERSQECLPPKKRDLPVTSCSTNHTPSSDASEWSRGVVVAGQSQTGARVSLGGDGT
EAITGLTVDQYGMLYKVAVPPATFSPTGLPSVVNMSPLPPTFNVASSLIQHPGIHYPPVH
YAQLPSTSLQFIGSPYSLPYAVPPNFLPNPLLSPSANLATTHLPHFVPYASLLAEEAAPP
PQAASPAQSFTKSSSATSPPGQLPHHSNTQPLDLAPGRMPIYYQTSRLPAGYTLHETSTA
GASPILTPQEGQSALEAAAANGQRQRERSVRRESEPLDSTSSKGESQGLVPVVECMVDGQ
LFSGSQTPRVEVAAPTHRGTPDTDLEVQRVVGALASQDYRVVAAQRKDEPSPLNLSHHTL
DHQGEGRGSARNPTEVVEKNQTRVFYPQSHQEPVKHRPLPKAVVVANGNLVPTGTDPSLL
PVGSEILVASSLDMQARATFPDKEPTPPPVTSSHLPSHFMKGAIIQLATGELKRVEDLQT
QDFVRSAEVSGGLKIDSSTVVDIQESQWPGFVMLHFVVGEQQSKVSIEVPPEHPFFVYGQ
GWSSCSPGRTAQLFSLPCHRLQVGDVCISISLQSLNSNSVSQASCAPPGQLGTPRERPER
TILGPRDLCDSEGKNQTSGEGSRVGEPSQPEPSAQACWPAPSFQRYSMQGEEARAALLRP
SFIPQEVKLSIEGRSNAGK
NT seq 2040 nt   +upstreamnt  +downstreamnt
atgaaacctgttcatgagcggagtcaggaatgccttccaccaaagaaacgagacctccct
gtgaccagctgctccacaaaccacacaccctccagtgatgcttctgagtggtcccgaggg
gttgtggtggctgggcagagccagacaggagccagagtcagcctcgggggtgatggaact
gaggccatcactggtctgacagtagatcagtatggcatgctgtacaaggtggccgtgcca
cctgccaccttctcaccgactggcctcccatctgttgtgaacatgagccccttacccccc
acatttaatgtagcatcttcactgattcaacatccaggaatccactatcccccagtccac
tatgctcagctcccatccacttcactgcagtttattgggtctccttacagccttccttat
gctgtgccacctaatttcctacccaatcctctcctttctccttctgccaaccttgccacc
actcaccttccacactttgtgccatatgcctccctcctagcagaagaggctgctcctccc
ccacaggctgcatccccagctcagtcatttaccaagtcctcttcggccacctccccaccc
ggccagttgccacatcactcgaatactcaaccactggatcttgctccaggccggatgccc
atttattatcagacatccaggctacctgctggatataccttgcatgaaacttccacagca
ggtgccagccccattcttacccctcaggagggccagtctgctctggaagcagctgctgcc
aatggacagagacaacgagagcgaagtgtaagacgagaaagtgagccccttgactccacc
agcagcaagggtgaaagccaaggactggtgccagtggtagaatgcatggtggatggacag
ttgttttcaggttctcagactccgagagtggaggtggcggcgccaacacatcgagggacc
ccagacaccgaccttgaggtccagcgggtagtcggcgctttagcttctcaggactatcgt
gtggtggcagctcagaggaaagatgaacccagccctcttaacctatcccatcataccctt
gaccatcagggtgagggacgagggtcagccaggaatcctacagaagtggtggagaaaaat
cagacccgtgtattctaccctcagtcccatcaggaaccagtaaaacacagacctttaccc
aaagcagtggttgtagccaatggcaacctggtgcccactggaactgaccctagcctgctg
cctgtgggctcagagatcctggtggcatcgagtctggacatgcaggccagagccactttc
ccagacaaggagccaacgccacctcccgttacctcctcccacttgccctcccatttcatg
aaaggcgccatcattcagttggctacgggggagctgaagcgggtagaggatctccaaacc
caggactttgtgcgtagtgccgaagtgagtggggggctgaagattgactctagcacagtc
gtggacattcaggagagccagtggcctggatttgttatgctgcatttcgtggttggtgaa
cagcagagtaaagtgagcatcgaggtgccccctgagcaccccttttttgtatatggccag
ggttggtcctcctgcagccctgggcggactgcacaactcttctctctgccctgccatcgg
ctacaggtgggagatgtctgcatctctatcagtttacagagcttgaacagtaactcagtt
tctcaggccagctgtgctcccccagggcagctgggtacaccccgagaaaggcctgagagg
acgatcttggggcccagagacctatgtgacagtgaggggaagaaccagacttcaggagag
ggttcccgggtgggagagccctcccagcctgagcctagtgctcaggcctgctggccagcc
ccaagcttccaaagatacagcatgcaaggggaggaggcacgggctgcgctgctccgcccc
tctttcattccgcaggaggtaaagctgtccatcgaagggcgttccaatgcaggaaaatga

  All links  
Ontology (1)   
   KEGG BRITE (1)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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