KEGG   Rattus norvegicus (rat): 108348771
Entry
108348771         CDS       T01003                                 
Symbol
Pcdhb16
Name
(RefSeq) protocadherin beta-16 precursor
  KO
K16494  protocadherin beta
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:rno04515]
    108348771 (Pcdhb16)
Cell adhesion molecules [BR:rno04515]
 Cadherins
  Protocadherins
   108348771 (Pcdhb16)
SSDB
Motif
Pfam: Cadherin Cadherin_2 Cadherin_C_2 Cadherin_3 VWA_3_C
Other DBs
NCBI-GeneID: 108348771
NCBI-ProteinID: NP_001391845
RGD: 11492646
Ensembl: ENSRNOG00000039471
Position
18:29466270..29469679
AA seq 799 aa
MEAAWMRNLRQRQVLAFFVLLSVSGAGAELGPYFIEEETERGSFVANLGKDLGVELAEIS
SRRARIISQENKEHLQLNVQSGDLLINERLDREELCGPIEPCVLHFQVLMENPLEIFQAE
LRVTDINDYSPVFSEREMILRIPENSARGNTFPLNNALDSDVDINNIQTYRLSSNSHFLV
VTRNRSDGRKYPELVLEKELDREEEPELRLTLTALDGGSPPRSGTTQVLIEVVDTNDNAP
EFQQPTYQVQTPENSPTGSLVLTVSANDLDSGDYGKVLYALSQPSEDISKTFEVNPVTGE
IRLRKEVNFETIPSYEVVIKATDGGGLSGKCTLLLQVVDVNDNAPEVMLSALTNPVPENS
PDEVVAVFSVRDPDSGNNGKVIASIEEDLPFLLKSSGKNFYTLVTKGALDREEREQLNIT
ITVTDLGIPRLTTQHTITVQVADINDNAPSFTQTSYTMFVRENNSPALHIGTISATDSDS
GSNAHITYSLLPPQDPQLALDSLISINVDNGQLFALRALDYEALQGFEFHVGATDQGSPA
LSSQALVHVVVLDDNDNAPFVLYPLQNASAPFTELLPRAAEPGYLVTKVVAVDRDSGQNA
WLSFQLLKATEPGLFNVWAHNGEVRTSRLLSERDAPKHKLLLLVKDNGDPPRSASVTLHV
LVVDAFSQPYLPLPEVAHDPAQEEDALTLYLVIALASVSSLFLLSVLLFVGVRLCRRARA
ASLSAYSVPQGHFPGQLVDVRGMGTLSQSYQYDVCLMGDSSGTSEFNFLKPVLPSSLHQC
SGKEIEGNSTLQNSFGFHH
NT seq 2400 nt   +upstreamnt  +downstreamnt
atggaggctgcatggatgcgcaatctgagacaaaggcaagtcctggctttctttgttttg
ctgagtgtgtctggggcaggggcagaactgggtccctatttcatagaggaagaaacagag
aggggctcctttgtggcaaatcttgggaaagatctgggggtggagctggcagagatatcc
agccggagggctcggatcatttcccaggaaaacaaagagcatttgcagctcaacgttcaa
tctggagatttgctcataaatgagagactggaccgagaggagctgtgtggccccattgag
ccttgtgttctgcatttccaagtgttaatggaaaaccctttagagatatttcaggctgaa
ctgagggtgacggacataaacgactattctccagtgttcagtgaaagagaaatgatactg
aggataccagaaaacagtgctcggggaaatacattccctttaaacaatgctctggactca
gacgtagatatcaacaatatccagacctataggctcagctcaaactctcatttcctggtt
gtaacccgcaaccgcagtgatggcaggaagtacccagagctggtgctggagaaagaactg
gatcgagaggaggaacctgagctgaggttaacgctgacagctttggatggtggctctcct
ccccggtctgggacgacacaggtcctcattgaagtagtggacaccaacgataatgcaccc
gagtttcagcagccaacataccaagtgcaaactcccgagaacagtccaaccggctctctg
gtactcacagtctcagccaatgacttagacagtggagactatgggaaagtcttgtacgca
ctttcgcaaccctcagaagatattagcaaaacattcgaggtaaaccctgtaaccggggaa
attcgcctacgaaaagaggtgaattttgaaactattccttcgtatgaagtggttatcaag
gccacggacgggggaggtctctcaggaaaatgcactctgttactgcaggtggtggacgtg
aatgacaatgccccagaagtgatgctatctgcgctaaccaacccagtcccagaaaattcc
cccgatgaggtagtggctgttttcagtgttagagatcctgactctgggaacaacggaaaa
gtgattgcatccatcgaggaagacctgccctttcttctaaaatcttcaggaaagaacttt
tacactttagtaaccaagggagcacttgacagggaagaaagagagcaattgaacatcacc
atcacagtcactgacctgggcatacccaggctcaccacccaacacaccataacagtgcag
gtggcagacatcaacgacaatgccccctccttcacccaaacctcctacaccatgtttgtc
cgcgagaacaacagccccgccctgcacataggcaccatcagcgccacagactcagactca
ggatccaatgcccacatcacctactcgctgctaccgccccaagacccacagctggccctc
gactccctcatctccatcaatgtagacaacgggcagctgttcgcgctcagggcgctagac
tatgaggctctgcagggcttcgagttccatgtgggcgccacagaccaaggctcgcccgcg
ctcagcagccaggctctggtgcacgtggtggtgttggacgacaatgacaatgcgcccttc
gtgctctacccgctgcaaaacgcctctgcacccttcactgagctgctgcccagggcggca
gagcctggatacctggttaccaaggtggtagctgtggaccgcgactctggccagaatgcc
tggctgtcattccagctgctcaaggccacggagcccgggctgttcaacgtatgggcgcac
aatggcgaggtacgcacctccaggctgctgagcgagcgcgacgcacccaagcacaagctg
ctgctgttggtcaaggacaatggagatcctccacgctctgccagtgttactctgcacgtg
ctagtggtggatgccttctctcagccctacctgcctctgccagaggtggcgcacgaccct
gcacaagaagaagatgcgctaacactctacctggtcatagctttggcatctgtgtcttct
ctcttcctcttgtctgtgctgctgttcgtgggggtgaggctctgcaggagggccagggca
gcctctctgagtgcctattctgtgcctcaaggccactttcctggccagctggtggatgtc
agaggtatggggaccctgtcccagagctaccagtatgatgtatgtctgatgggggattct
tctgggaccagcgaatttaacttcttaaagccagttctgcctagctctctgcaccagtgc
tctgggaaagaaatagagggaaattccacactccagaatagttttgggtttcatcattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system