KEGG   Rattus norvegicus (rat): 108350839
Entry
108350839         CDS       T01003                                 
Name
(RefSeq) high mobility group protein B1-like
  KO
K10802  high mobility group protein B1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03410  Base excision repair
rno04140  Autophagy - animal
rno04217  Necroptosis
rno04613  Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    108350839
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    108350839
  09143 Cell growth and death
   04217 Necroptosis
    108350839
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    108350839
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    108350839
   03400 DNA repair and recombination proteins [BR:rno03400]
    108350839
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    108350839
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    108350839
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     108350839
   MMR (mismatch excision repair)
    Other MMR factors
     108350839
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   108350839
SSDB
Motif
Pfam: HMG_box_2 HMG_box HMG_box_5 NOA36
Other DBs
NCBI-GeneID: 108350839
NCBI-ProteinID: XP_063143033
RGD: 11440908
Position
4:92636679..92646909
AA seq 214 aa
MGKGYPKKPRGKMSSHAFFVQTCREEHKKKHLNASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNALKRPPSAFFLFCSEYRPKIKGEHPGL
SIGDVAKKLGEMWTNTAVDDKQPCEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEDDEEDEDEEEEEEENEDEEEEEDDDE
NT seq 645 nt   +upstreamnt  +downstreamnt
atgggcaaaggatatcctaagaagccgagaggcaaaatgtcctcacatgcattctttgtg
caaacctgccgggaggagcacaagaaaaagcacctgaatgcttctgtcaacttctcagag
ttctccaagaagtgctctgagagatggaagaccatgtctgctaaagaaaaggggaaattt
gaagatatggcaaaggctgacaaggctcgttatgaaagagaaatgaaaacctacattccc
cccaaaggggagaccaaaaagaagttcaaggaccccaatgccctcaagaggcctccatca
gccttcttcttgttctgttctgagtaccgcccaaaaatcaaaggcgagcatcctggctta
tccattggtgatgttgcgaagaaactaggagagatgtggaccaacactgccgtggatgac
aagcagccctgtgagaagaaggccgccaagctgaaggagaagtatgagaaggatattgct
gcctacagagctaaaggaaaacctgatgcagcgaaaaagggggtggtcaaggctgagaag
agcaagaaaaagaaggaagaggaagacgatgaggaggatgaagatgaggaggaagaggag
gaagaaaacgaagacgaagaagaagaagaagatgatgatgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   RGD (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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