KEGG   Rattus norvegicus (rat): 114245
Entry
114245            CDS       T01003                                 
Symbol
Hcn3
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3
  KO
K04956  hyperpolarization activated cyclic nucleotide-gated potassium channel 3
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04929  GnRH secretion
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09152 Endocrine system
   04929 GnRH secretion
    114245 (Hcn3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:rno04040]
    114245 (Hcn3)
Ion channels [BR:rno04040]
 Voltage-gated cation channels
  Cyclic nucleotide-gated channel (HCN)
   114245 (Hcn3)
SSDB
Motif
Pfam: Ion_trans Ion_trans_N cNMP_binding Ion_trans_2
Other DBs
NCBI-GeneID: 114245
NCBI-ProteinID: NP_446137
RGD: 620691
Ensembl: ENSRNOG00000020444
UniProt: Q9JKA8
Position
2:complement(176849635..176867726)
AA seq 780 aa
MEEEARPAVGDGEAATPARETPPAAPAQARAASGGVPESAPEPKRRQLGTLLQPTVNKFS
LRVFGSHKAVEIEQERVKSAGAWIIHPYSDFRFYWDLIMLLLMVGNLIVLPVGITFFKEE
NSPPWIVFNVLSDTFFLLDLVLNFRTGIVVEEGAEILLAPRAIRTRYLRTWFLVDLISSI
PVDYIFLVVELEPRLDAEVYKTARALRIVRFTKILSLLRLLRLSRLIRYMHQWEEIFHMT
YDLASAVVRIFNLIGMMLLLCHWDGCLQFLVPMLQDFPSDCWVSMNRMVNHSWGRQYSHA
LFKAMSHMLCIGYGQQAPVGMPDVWLTMLSMIVGATCYAMFIGHATALIQSLDSSRRQYQ
EKYKQVEQYMSFHKLPADTRQRIHEYYEHRYQGKMFDEESILGELSEPLREEIINFTCRG
LVAHMPLFAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLLSVLARGAR
DTRLTDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDHFNAVLEEFPMMRRAFETVAM
DRLRRIGKKNSILQRKRSEPSPGSSSGGVMEQHLVQHDRDMARGIRGLAPGTGARLSGKP
VLWEPLVHAPLQAAAVTSNVAIALTHQRGPLPLSPDSPATLLARSARRSAGSPASPLVPV
RAGPLLARGPWASTSRLPAPPARTLHASLSRTGRSQVSLLGPPPGGGGRRLGPRGRPLSA
SQPSLPQRATGDGSPRRKGSGSERLPPSGLLAKPPGTVQPSRSSVPEPVTPRGPQISANM
NT seq 2343 nt   +upstreamnt  +downstreamnt
atggaggaggaggcgcggccggcggtgggggacggggaagcggcgactcctgcacgcgag
acgcctcctgcggctcccgcccaggcccgcgcggcctcaggtggggtgccagagtctgcg
cccgagccgaagaggcggcagctcgggacgctgctgcagccgaccgtcaacaagttctct
ctccgggtcttcggcagccacaaagcggtggaaatcgagcaggagagggtgaagtccgcc
ggggcctggatcatccacccctacagcgacttccggttttactgggacctgatcatgctg
ctgctgatggtggggaacctcatagtactgcccgtgggcatcactttcttcaaggaggag
aactccccaccctggatcgtcttcaatgtcctctcggacactttcttcctgctggatctg
gtgctcaacttccgaactggcatcgtggtggaggaaggtgcggagatcctgttggcgccc
agggctatccgcacgcgttacctgcgcacctggttcctggtggacctgatttcctccatc
cctgtggattacatcttcctagtggtagagctggagccacgactagacgctgaggtctac
aaaacggcacgggccctgcgcatcgttagattcaccaagatccttagcctgctgcggctg
ctccgcctctcccgcctcatccgatacatgcaccagtgggaggagatctttcacatgacc
tacgacctggccagtgcagtggttcgcatcttcaacctcattggaatgatgttgctgctg
tgtcactgggatggctgtctgcagttcctggtccctatgctgcaggacttcccttccgac
tgctgggtctccatgaaccgcatggtgaaccactcgtggggccgccagtactcccacgcc
ctgttcaaggccatgagtcacatgctgtgcattggctacgggcagcaggcaccagtaggc
atgcctgacgtctggctcaccatgctcagcatgattgtgggcgccacctgctatgccatg
ttcatcggccacgccaccgccctcatccagtccctggactcgtcccggcgccagtaccag
gagaagtacaagcaggtggagcagtacatgtccttccacaagctgccagccgacacacgg
cagcgcatccacgagtactacgagcatcggtaccagggcaagatgttcgatgaagagagc
atcctgggggagctgagcgagccgcttcgggaggagattattaacttcacctgccggggc
ctggtggcccacatgccgctgtttgctcatgctgaccccagtttcgtcaccgcagtactc
accaagctccgttttgaggtcttccaacctggggatctggtggtgcgtgagggctccgtg
ggcaggaagatgtacttcatccagcatgggctgctcagtgtgttggcacggggcgcccgg
gacactcgcctcactgacggatcctactttggggagatctgcctgctgactcgaggtcgg
agaacagccagtgtaagggctgacacctactgtcgcctctactcactcagcgtggaccac
ttcaatgcagtgcttgaggagttcccgatgatgcgcagggcttttgagactgtggccatg
gaccggcttcggcgcatcggcaaaaagaattcgatattgcagcggaaacgctctgagccg
agtccaggcagcagcagtggtggcgtcatggagcagcatttggtacaacacgacagagac
atggctcgtggtattcggggtctggctccgggcacaggagctcgcctcagtggaaagcca
gtgctgtgggaaccactggtacacgcacctctgcaggcagctgctgtgacctccaacgtg
gccatagccttgactcatcagcgaggccctctgcccctctcccctgattctccagccacc
ctcctggctcgatctgctagacgctcagcaggctccccagcctccccactggtgcctgtc
cgagcaggtcctctgctggcccggggaccctgggcgtccacttctcgcctgcctgctcca
cctgcccgaaccctccatgccagcctatcccggacagggcgttcccaggtgtctctgttg
ggccctcccccaggaggaggtggtcggaggctaggacctcggggccgcccactctctgcc
tctcaaccctctctgcctcagcgagccacgggggatggctctcctaggcgcaaaggctct
ggaagtgagcgtctgcccccctcggggctcctggccaagcctccagggactgtccagcca
tccaggtcatcagtgcctgagccagttacccccagaggtccccaaatttctgccaacatg
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (10)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (12)   
   RefSeq(nuc) (8)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (36)   

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