KEGG   Rattus norvegicus (rat): 116543
Entry
116543            CDS       T01003                                 
Symbol
Ebf1
Name
(RefSeq) transcription factor COE1
  KO
K09103  early B-cell factor
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    116543 (Ebf1)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Basic helix-loop-helix (bHLH)
   HLH domain only
    116543 (Ebf1)
SSDB
Motif
Pfam: COE1_DBD COE1_HLH TIG HLH
Other DBs
NCBI-GeneID: 116543
NCBI-ProteinID: NP_446272
RGD: 620953
Ensembl: ENSRNOG00000028845
Vega: OTTRNOG00000000878
UniProt: Q63398 A6HDP7
Position
10:29597221..29990571
AA seq 584 aa
MFGIQESIQRSGSSMKEEPLGSGMNAVRTWMQGAGVLDANTAAQSGVGLARAHFEKQPPS
NLRKSNFFHFVLALYDRQGQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGI
RTEQDFYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDP
VIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKH
GRRARRLDPSEAATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITP
HAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHP
GDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHNQLPALANT
SVHAGMMGVNSFSGQLAVNVSEASQATNQGFTRNSSSVSPHGYVPSTTPQQTNYNSVTTS
MNGYGSAAMSNLGGSPTFLNGSAANSPYAIVPSSPTMASSTSLPSNCSSSSGIFSFSPAN
MVSAVKQKSAFAPVVRPQTSPPPTCTSTNGNSLQAISGMIVPPM
NT seq 1755 nt   +upstreamnt  +downstreamnt
atgtttgggatccaggaaagcatccaacggagtggaagcagtatgaaggaagagccgctg
ggcagcggcatgaacgcggtgcggacgtggatgcagggcgccggggtgctggacgccaac
acagcggcgcagagcggggtgggtctggcccgggctcactttgagaagcagccgccttct
aacctgcggaaatccaacttcttccacttcgtcctggccctctacgacagacagggccag
cccgtggagattgagaggacggcctttgtggggttcgtggagaaggaaaaagaagccaac
agcgaaaagaccaataatgggatccactaccggctccagctcctctacagcaatgggata
aggaccgaacaggatttctacgtgcgcctcatcgactccatgacaaaacaagccatagtg
tatgaaggccaagacaagaacccggaaatgtgccgagtactgctcacacacgagatcatg
tgcagccgctgttgtgacaagaaaagctgtggcaaccgaaatgagactccctcagatcca
gtgataattgacagattcttcctgaagtttttccttaagtgtaaccaaaattgcctaaag
aatgcggggaacccacgtgacatgcggagattccaggtcgtggtgtctaccacagtcaac
gtggatggccatgtcctggcagtctctgataacatgtttgtccacaataactccaaacac
gggcggagggctaggaggcttgacccctcggaagcagctactccctgtatcaaagccatc
agcccgagtgaaggatggacgacgggaggcgcgactgtgatcatcataggggacaatttc
tttgatgggttacaggtcatattcggtaccatgctggtctggagtgagttgataactcct
catgccatccgtgttcagacacctcctcggcacatccctggtgttgtggaagtcacattg
tcctacaagtccaagcagttctgcaaagggacaccaggcagattcatctatacagcactc
aatgaacccaccatcgactatggtttccagaggttacagaaggtcattccccggcatcct
ggtgacccagagcgtttgccaaaggaagtgatccttaaaagggctgcagatctggttgaa
gccctgtatgggatgccccacaacaaccaggagattatcctgaagagagctgccgacatt
gctgaggctctgtacagtgtccctcgaaaccacaaccagctcccggccctcgctaacact
tcggtccacgcagggatgatgggcgtgaactccttcagtggacaactggctgtgaatgtc
tctgaggcatcacaagccaccaatcaaggtttcacccgcaactcaagcagtgtgtcacca
catggatatgtgcctagcaccaccccacagcagaccaactataactctgtcaccacaagc
atgaacggctacggctctgccgccatgtccaatttgggcggctccccaaccttcctcaat
ggctcagctgccaactcaccctacgccattgtgccatccagccccaccatggcctcatct
acaagcctcccctccaactgcagcagctcctcgggcatcttctccttctcaccagccaac
atggtctctgctgtgaaacagaagagtgctttcgcaccagttgtcagaccccagacctcc
ccgcctcccacctgcaccagcaccaacgggaacagcctgcaagcgatttctggcatgatt
gtccctcccatgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (14)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (11)   
DNA sequence (19)   
   RefSeq(nuc) (11)   
   GenBank (4)   
   EMBL (4)   
Protein domain (4)   
   Pfam (4)   
All databases (47)   

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