KEGG   Rattus norvegicus (rat): 116552
Entry
116552            CDS       T01003                                 
Symbol
Plod1
Name
(RefSeq) procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 precursor
  KO
K00473  procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 [EC:1.14.11.4]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno00310  Lysine degradation
rno01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:rno00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00310 Lysine degradation
    116552 (Plod1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    116552 (Plod1)
Enzymes [BR:rno01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.4  procollagen-lysine 5-dioxygenase
     116552 (Plod1)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   116552 (Plod1)
SSDB
Motif
Pfam: 2OG-FeII_Oxy Anp1 2OG-FeII_Oxy_3
Other DBs
NCBI-GeneID: 116552
NCBI-ProteinID: NP_446279
RGD: 621382
Ensembl: ENSRNOG00000007763
UniProt: D3ZQ74 A6IU34
Position
5:complement(163623847..163650737)
AA seq 728 aa
MRSLLLLASLAWLLLAQAKDDAKLEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQSLGL
GEDWSAAGGPSAAGGGQKVRLLKKALKKYADKEDLVILFVDSYDVVFASGPRELLKKFQQ
AKSRVVFSAEELIYPDRRLEAKYPTVPDGKRFLGSGGFIGYAPSLSKLVAEWEGQDNDSD
QLFYTKIFLDPEKREQINISLDHRCRIFQNLDGALDEVVLKFEMGHVRARNLAYDTLPVV
IHGNGPTKLQVNYLGNYIPRFWTFETGCTVCDEGLRSLKGIGDEALPTVLVGVFIEQPTP
FLSLFFRRLLHLRYPQKQMRLFIHNQEQHHKLQVEQFLAEHGGEYQSVKLVGPEVRMANA
DARNMGADLCRQDQTCTYYFSVDADVALTEPNSLRLLIEQNKNVIAPLMTRHGRLWSNFW
GALSADGYYARSEDYVDIVQGRRVGVWNVPYISNIYLIKGSALRAELRHVDLFHYSKLDP
DMSFCANVRQQEVFMFLTNRHTFGHLLSLDNYQTTHLHNDLWEVFSNPEDWKEKYIHENY
TKALAGKLVETPCPDVYWFPIFTEVACDELVEEMEHYGQWSLGDNKDNRIQGGYENVPTI
DIHMNQITFEREWHKFLVEYIAPLTEKLYPGYYTKAQFDLAFVVRYKPDEQPSLMPHHDA
STFTINIALNRVGEDYEGGGCRFLRYNCSVRAPRKGWALMHPGRLTHYHEGLPTTKGTRY
IAVSFVDP
NT seq 2187 nt   +upstreamnt  +downstreamnt
atgcggtccctgctgctcctggcctcgctggcctggcttcttctggcccaggcgaaggac
gacgccaagctggaggacaaccttttggtcctcaccgtggccacaaaagagacagagggc
ttccgccgattcaagcgctcagcccagttcttcaactacaagatccagtcactgggcctg
ggggaggactggagcgcggccgggggaccatcggcagcaggtggaggacagaaggttcgg
ctgctgaagaaggcactgaaaaagtatgcagacaaggaagacctggttattctcttcgtt
gacagctatgacgtggtgtttgcctcgggaccccgggaactcttaaagaagttccagcag
gccaagagccgggtggtcttctcagcagaggagcttatctaccctgaccggaggctggag
gccaagtatcccacagtccccgatggcaaacgattcttgggctctggaggcttcattggt
tatgctcccagcctcagcaaactggtggccgagtgggagggccaggacaatgacagcgac
cagctcttttataccaagatcttcttggacccggagaagagggagcaaatcaatatcagc
ctggaccatcgctgccgaatcttccagaacctggatggagccttggatgaagtcgtactc
aagtttgaaatgggccacgtgagagcccggaatctggcctatgacaccctcccagtggtc
atccacggcaacgggcccaccaagctgcaggtgaactacctgggcaactacattcctcga
ttctggaccttcgaaacgggctgcaccgtgtgcgacgagggcctgcgaagcctcaagggc
attggggatgaagctctccctaccgtcctggtcggtgtgttcattgagcagcccacacca
ttcctatccttgttctttcggcggctgctgcacctacgataccctcagaaacagatgcgg
ctcttcattcacaaccaagaacagcaccacaagcttcaggtagagcagttcctggcagag
cacggcggtgagtaccagtctgtgaagctagtgggtcccgaggtacgcatggccaacgca
gacgccaggaacatgggcgccgacctgtgccgccaggatcaaacatgcacctactacttc
agtgtggatgctgacgtggccctgaccgagccgaacagcctacggctcctgattgagcaa
aacaagaatgtcattgctccactcatgacccgtcacgggaggctctggtccaacttctgg
ggggcactgagtgcggatgggtactacgcccgctcggaggactacgtggacatcgtgcag
ggccgtcgtgttggcgtctggaatgtgccttacatctcaaacatctacctgatcaagggc
agtgccctgcgggccgagctgcggcacgtagacctgttccactacagcaagctggatcct
gacatgagtttctgcgccaatgtccgacagcaggaggtgttcatgttcctgaccaaccgg
catacctttggccacctgctgtcgctggataattaccagaccacccacctacataatgat
ctctgggaggtgttcagcaaccctgaggattggaaagagaagtacatccacgagaattac
accaaggccctggcagggaagctggtggagacgccttgtccggatgtctactggttcccc
atcttcacggaggtggcctgtgatgagctggtggaggaaatggaacactacggccaatgg
tctctgggtgacaataaggacaaccgtatccagggtggctatgaaaacgtgcccactatt
gacatccacatgaaccagatcaccttcgagcgggagtggcacaagttcctggtggagtac
atcgcccccctgacagagaagctgtaccccggctactacaccaaggcccagtttgatcta
gccttcgtcgtccgctataagcctgatgagcagccttccttgatgcctcaccatgacgcc
tctactttcaccatcaacatagccctgaacagggttggggaagattatgagggtggaggt
tgccgatttctacgctacaactgctccgtgagagccccaaggaagggctgggccctcatg
caccccgggcggctcacacactaccacgaggggcttcccactaccaagggtacccgctac
attgccgtgtccttcgtcgatccctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (16)   
   RefSeq(nuc) (2)   
   GenBank (7)   
   EMBL (7)   
Protein domain (3)   
   Pfam (3)   
All databases (43)   

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