KEGG   Rattus norvegicus (rat): 116643
Entry
116643            CDS       T01003                                 
Symbol
Vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04137  Mitophagy - animal
rno04141  Protein processing in endoplasmic reticulum
rno05014  Amyotrophic lateral sclerosis
rno05022  Pathways of neurodegeneration - multiple diseases
rno05134  Legionellosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    116643 (Vcp)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    116643 (Vcp)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05134 Legionellosis
    116643 (Vcp)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    116643 (Vcp)
   05022 Pathways of neurodegeneration - multiple diseases
    116643 (Vcp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    116643 (Vcp)
   03009 Ribosome biogenesis [BR:rno03009]
    116643 (Vcp)
   04131 Membrane trafficking [BR:rno04131]
    116643 (Vcp)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    116643 (Vcp)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     116643 (Vcp)
Ribosome biogenesis [BR:rno03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    116643 (Vcp)
Membrane trafficking [BR:rno04131]
 SNARE
  SNARE associated proteins
   Others
    116643 (Vcp)
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    116643 (Vcp)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   116643 (Vcp)
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_5 AAA_33 AAA_2 AAA_22 TIP49 AAA_14 RNA_helicase AAA_28 Vps4_C nSTAND3 AAA_18 Parvo_NS1 Mg_chelatase AAA_17 ATPase_2 IstB_IS21 AAA_7 ATPase DUF815 Bac_DnaA ABC_tran AAA_24 NB-ARC ResIII TsaE Zeta_toxin NACHT Sigma54_activat Viral_helicase1 SLFN-g3_helicase bpMoxR KAP_NTPase Zot UFD1 DUF3944
Other DBs
NCBI-GeneID: 116643
NCBI-ProteinID: NP_446316
RGD: 621595
Ensembl: ENSRNOG00000034242
UniProt: P46462 A6IIZ6
Position
5:complement(62005984..62025387)
AA seq 806 aa
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN
LRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGG
AGPSQGSGGGTGGNVYTEDNDDDLYG
NT seq 2421 nt   +upstreamnt  +downstreamnt
atggcctctggagccgattcaaaaggtgatgatttatcaacagccattctcaaacagaag
aaccgtcccaatcggttaattgttgatgaagccatcaatgaagataacagtgtggtgtcc
ttgtcccagcccaagatggatgaactacagttgttcagaggtgacacggtgttgctaaaa
ggaaagaagagaagggaagctgtatgcattgttctttctgatgacacgtgttctgatgag
aagattcgaatgaatagagttgttcggaataacctccgagttcgcctaggagatgtcatc
agcatccagccatgccctgatgtaaagtatggcaaacgtatccatgtgctacccattgat
gacacagtggaaggcatcactggcaatctttttgaggtataccttaagccgtacttcctg
gaagcatatcggcccatccgtaaaggagatattttccttgtccggggtgggatgcgtgct
gtggagttcaaagtagtagagacagatcccagcccttactgtattgttgctccagacaca
gtgatccactgtgagggggagccaatcaagcgagaggatgaggaggagtccttgaatgaa
gtaggctatgatgacatcggtggttgcaggaagcagctagctcagataaaggagatggtg
gagctgccactgagacatcctgcactctttaaggcaattggtgtgaagcctcctcgggga
atcttgctatatggacctcctgggacagggaaaaccttgattgcccgagctgtggcaaat
gaaactggagccttcttctttctgatcaatggtcctgaaatcatgagcaaattggctggt
gagtctgagagcaaccttcgtaaagcctttgaggaagctgaaaagaatgctcctgccatc
atcttcatcgacgagcttgatgccattgcacccaaaagagagaaaactcacggggaagtg
gagcgtcgcatcgtgtctcagttgttgacccttatggatggcctaaagcagagagcacat
gtgatagttatggcagcaaccaatagacccaacagcattgacccagccctacggcgattt
ggtcgctttgacagagaggtagatattggaatccctgatgctacaggacgtttggaaatt
cttcagatccataccaagaacatgaaactggcagatgatgtggacttggaacaggtagcc
aatgagactcatggtcatgtgggtgctgacttggcagccctgtgttcagaggctgctcta
caggccatccggaaaaaaatggacctcattgacctagaagatgagaccattgacgctgag
gtcatgaattccctggcagttactatggatgacttccggtgggccttaagtcaaagcaac
ccatcagcacttcgggaaactgtggtagaagtgccacaagtaacctgggaagacattgga
ggcctggaggatgtcaaacgggagcttcaggagttggttcagtatcctgtggagcatcca
gacaaattcctcaaatttggcatgactccttccaaaggtgttcttttctatggaccgcct
ggctgtgggaaaaccttactggccaaagccattgctaatgaatgccaggctaacttcatc
tccatcaagggtcctgagctgcttaccatgtggtttggggaatctgaggccaatgtcagg
gaaatatttgacaaggcacgacaagctgccccctgtgtactcttctttgatgagttagat
tcaattgccaaggctcgtggtggtaatattggagatggtggtggagctgcagaccgagtc
atcaatcagatcctgacagaaatggatggcatgtccacaaaaaagaatgtgtttatcatt
ggagctaccaaccggcctgacatcattgatcctgctatcctaagacctggccgtcttgat
cagctcatttatatcccacttcctgatgagaagtcccgtgttgccatcctaaaagccaat
ctgcgaaaatccccagttgccaaggatgtggatttggagttcttggctaagatgactaat
ggcttttctggagctgacctgacagaaatttgccaacgtgcttgtaaactagccattcgt
gaatctatcgagagtgagattaggcgagaacgagagaggcagacaaatccatcagctatg
gaagtagaagaggatgatccagtgcctgagatccgcagagatcactttgaggaagccatg
cgttttgcccgacgttctgtcagtgataatgacattcggaagtatgaaatgtttgcccag
acactgcagcaaagtcgaggttttggcagcttcagattcccttcagggaaccagggtgga
gctggcccaagtcagggcagtggaggtggcacaggtggcaatgtgtacacagaagacaat
gacgatgacctctatggctaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (41)   
   Pfam (41)   
All databases (69)   

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