KEGG   Rattus norvegicus (rat): 116808
Entry
116808            CDS       T01003                                 
Symbol
Pcdh12
Name
(RefSeq) protocadherin-12 precursor
  KO
K16499  protocadherin delta 2
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:rno04515]
    116808 (Pcdh12)
Cell adhesion molecules [BR:rno04515]
 Cadherins
  Protocadherins
   116808 (Pcdh12)
SSDB
Motif
Pfam: Cadherin Cadherin_2 Cadherin_3
Other DBs
NCBI-GeneID: 116808
NCBI-ProteinID: NP_446396
RGD: 619917
Ensembl: ENSRNOG00000019265
UniProt: A6J3F5
Position
18:complement(30354910..30370485)
AA seq 1179 aa
MLLLPFLLGLLGPGSYLFISGACQEVATVTVKFQVAEEVPSGTVIGKLSQEPGVEERRGK
AGDAFQILQLPQALPIQMNSEDGLLNTSSRLDREKLCRQQDPCLVSFDVLATGASALIHV
EIQVLDINDHQPQFPKDEQELEISESASLHTRIPLDRALDQDTGPNSLYSYSLSPSEHFA
LDVIVGPDETKHAELVVVKELDREVHSYFDLVLTAYDNGNPPKSGTSVVKVNVLDSNDNS
PVFAESSLALEIPEDTAPGTLLINLTATDPDQGPNGEVEFFFGKHVSPEVMNTFGIDAKT
GQIVLLQPLDYEKNPAYEVDVQARDLGPNSIPGHCKVLIKVLDVNDNAPSIHITWASQMS
LVSEDLPRDSFIALVSANDLDSGNNGLVNCWLNQELGHFRLKRTNGNTYMLLTSAMLDRE
QWPTYTLTVFAQDQGPQALSAEKELQIQVSDVNDNAPVFEKSRYEVSTWENNPPSLHLIT
LKAHDADLGSNGKVSYRIKDSPVSHLVIIDSETGEVTAQRSLDYEEMAGFEFQVIAEDRG
QPQLSSSISVWVSLLDANDNTPEVIQPALSEGKATLSVLVNASTGHLLLPIESPSGMDPA
GTGPTPPKATHSPWSFLLVTIVARDADSGANGELLYSIQSGNDAHLFVLSPSLGQLFINV
TNASSLIGSQWDLGIVVEDQGSPSLQTQVSLKVVFVTSMDHLRDSAHEPGILSTPALAMI
CLAVLLAVFGLILALLVSICRIEKRDNRAYNCREAESMYRHQPKRPQKHIQKADIHLVPM
LRAQEDEAEEVRPPHKDTSKETLMEAGWDSCLQAPFHLTPTLYRTLRNQGNQGALAESQE
VLQDTFNFLFNHPRQRNASRENLNLPESPPTLRQPLLKPLKVPGSPIARVTGDQGSKEAP
QSPPASSATLRRQRNLNGKVSPKGESSPHQILRSLVRLSVAAFAERNPVEELAGDSPPVQ
QISQLLSLLHQGQFQPKPNHRGNKYSAKPGSSRATIPDTDGLGIRPGGLSEPDLEEGPPS
PEEDLSVKRLLEEELSSLLDPNTGLALDKLSPPDPAWMARLSLPLTTNYRDNLSSPDAAA
SEEPRTFQTFGKTVGPGPELSATGTRLASTFVSEMSSLLEMLLEQNTVPVEAASAALRRL
SVCGRTLSLDLATSGASGSEAQLGRKKAAESSLGCGRNL
NT seq 3540 nt   +upstreamnt  +downstreamnt
atgctacttctgcctttcctgctagggctcttaggaccaggaagctacttgttcatttca
ggggcttgtcaggaggtggccactgtcacggtgaaattccaagtggcagaggaagtgcca
tctggcaccgtgatagggaaactgtcccaagaaccaggagtggaggagaggcgtgggaag
gcaggagatgcctttcagattctgcagctgcctcaggcactgccgattcagatgaactct
gaggatggcctgctcaacacttccagccggctggatcgggagaagctctgtcggcagcaa
gatccctgcctggtgtcctttgatgtgcttgccacaggggcttctgctctaattcatgtg
gagattcaggtgctggacatcaatgaccaccagcctcagtttcccaaagatgagcaggag
ctggaaatctctgagagtgcttctctgcacacacgaattcccttggacagagctcttgac
caagacactggccctaacagcttatattcctattccctgtctcccagtgaacactttgcc
ctggatgttattgtgggccctgatgagaccaaacacgcagaacttgtggtggtgaaggag
ttggacagggaagtccactcatattttgatctggtgctgactgcctatgacaatgggaat
ccccccaagtcaggtaccagcgtggtcaaggtcaatgtcctagattccaatgacaatagc
ccagtgtttgctgagagttcactagcactagaaatcccagaagacactgcccctggtact
cttctcataaacctgactgctacggatccagaccaaggccccaatggggaggtagaattc
ttctttggcaagcatgtgtccccagaggtgatgaatacctttggtatagatgctaagaca
ggccagatcgttctgctccaacccctagactacgagaaaaaccctgcctatgaggtggat
gtccaggcaagggacttaggtcccaattccatcccaggccattgcaaagttctcatcaaa
gttctggatgtcaatgacaacgccccaagcatccacatcacgtgggcctcccagatgtcg
ctggtgtcagaagatcttcccagggacagcttcattgctcttgtcagtgcgaatgacttg
gactcaggaaacaatggtctagtcaactgttggctgaatcaagagctaggtcacttcaga
ctgaaaaggactaatggcaacacgtacatgctgctcaccagtgccatgctggacagagag
caatggcccacatacactctcactgtgtttgcccaagaccaaggaccccaggccttatca
gctgagaaggagctccagattcaggtcagtgatgtcaatgacaatgcccctgtatttgag
aagagccggtatgaggtctccacttgggaaaacaaccccccctctcttcaccttatcacg
ctcaaagctcatgatgctgacttgggcagtaatggaaaagtgtcataccgtatcaaggac
tcccctgtttctcacttagtcattattgactctgaaacaggagaagtcactgctcagagg
tcgctggactatgaagagatggcaggctttgagttccaggtgatagcagaggacagaggg
caaccccagctctcatccagcatctcggtgtgggttagcctcttggatgccaacgacaat
accccagaagtgattcagcctgcgctcagtgaaggcaaagccaccctttcagtgcttgta
aatgcctccacgggccaccttctgttgcccattgagagccccagtggcatggatccagca
ggtactggtccaacaccaccaaaggctacccacagcccctggtccttccttttggtgaca
atcgtggcaagggatgcagactcgggggccaatggggaactcctttacagcattcaaagt
gggaatgatgctcatctctttgtcctcagcccttccctggggcagctattcattaatgtc
accaatgccagcagcctcatcgggagtcaatgggacctaggcatagtggtagaggaccag
gggagcccctccttgcagacccaagtttcactgaaggtcgtgtttgtcaccagcatggac
cacctaagggactctgctcacgagcccggaattctgagcacaccagcgctggctatgatc
tgcctggctgtactgctggccgtctttggattgatcttggctttgcttgtatccatctgc
cggatagagaaaagggataatagggcctacaactgtcgggaagctgagtctatgtaccgc
caccagcccaagaggccccagaaacacattcagaaggcagatatccacctggtgcctatg
cttagggcccaggaggatgaggctgaggaagttaggccacctcacaaggataccagtaaa
gagacattgatggaggcaggttgggactcctgcctacaggcccccttccacctcacacca
accctataccggaccctgcgtaaccaaggcaaccagggagcactggcagagagccaggag
gtactgcaggacaccttcaactttctcttcaaccaccccaggcagaggaatgcctcccga
gagaacctcaaccttcctgagtccccacccaccctacgccagccactcttaaagcctctg
aaggtgcctggcagccccatagcgagggtgactggagaccaaggcagcaaggaggcacca
cagagcccaccagcgtcctctgcaaccctaagacgacagaggaatctcaatggcaaagtg
tctcctaaaggcgagtccagtcctcatcagattctcaggagcctggttcgactctctgta
gctgcttttgcagaacggaaccctgtggaggagcttgctggggactctcctcctgttcag
caaatctcccagctgctgtccttgctgcatcagggccaattccagcccaaaccaaaccac
cgaggaaataaatactcggccaagcccggcagcagcagagctaccatcccagacacagat
ggcttaggcatcaggcctggtggcctatcagaacctgacttggaagaagggcccccaagc
ccagaggaggatctttctgtaaagcgacttctagaagaagagttgtccagcctgttggat
cctaatacaggtctagccctggacaagctgagtccccctgacccagcctggatggcgaga
ctgtcattgcccctcactaccaattaccgagacaacttgtcttcccctgatgctgcagca
tcagaggaaccgagaaccttccagacattcggcaagacagtcggacccggtcccgagcta
agcgcaacaggcacgcgcctggccagcactttcgtctcggagatgagctcactgctggag
atgttgttggagcagaacacggtgcctgtggaagctgcgtctgcggctttgcggaggctc
tcagtgtgcgggaggaccctgagtctagacctagccaccagtggggcctcgggctcagaa
gcacagctgggtagaaaaaaggcagctgagagcagtcttggctgtggcaggaatctatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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