KEGG   Rattus norvegicus (rat): 117258
Entry
117258            CDS       T01003                                 
Symbol
Cntn1
Name
(RefSeq) contactin-1 precursor
  KO
K06759  contactin 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04514  Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    117258 (Cntn1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:rno04515]
    117258 (Cntn1)
   00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rno00537]
    117258 (Cntn1)
Cell adhesion molecules [BR:rno04515]
 Immunoglobulin superfamily
  Contactins
   117258 (Cntn1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:rno00537]
 Others
  117258 (Cntn1)
SSDB
Motif
Pfam: Ig_3 I-set ig Ig_2 fn3 V-set Pur_ac_phosph_N Ig_5 Sp38 C2-set_2 Big_3_4 ChitinaseA_N
Other DBs
NCBI-GeneID: 117258
NCBI-ProteinID: NP_476459
RGD: 621300
Ensembl: ENSRNOG00000004438
UniProt: Q63198 A6K7R9
Position
7:125142638..125440397
AA seq 1021 aa
MKTPLLVSHLLLISLTSCLGEFTWHRRYGHGVSEEDKGFGPIFEEQPINTIYPEESLEGK
VSLNCRARASPFPVYKWRMNNGDVDLTNDRYSMVGGNLVINNPDKQKDAGIYYCLASNNY
GMVRSTEATLSFGYLDPFPPEDRPEVKVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVF
ITMDKRRFVSQTNGNLYIANVESSDRGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPY
PADIVVQFKDIYTMMGQNVTLECFALGNPVPDIRWRKVLEPMPTTAEISTSGAVLKIFNI
QLEDEGLYECEAENIRGKDKHQARIYVQAFPEWVEHINDTEVDIGSDLYWPCVATGKPIP
TIRWLKNGYAYHKGELRLYDVTFENAGMYQCIAENAYGTIYANAELKILALAPTFEMNPM
KKKILAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVNSSRILIWEDGSLEINNITRNDGG
IYTCFAENNRGKANSTGTLVITNPTRIILAPINADITVGENATMQCAASFDPSLDLTFVW
SFNGYVIDFNKEITNIHYQRNFMLDANGELLIRNAQLKHAGRYTCTAQTIVDNSSASADL
VVRGPPGPPGGLRIEDIRATSVALTWSRGSDNHSPISKYTIQTKTILSDDWKDAKTDPPI
IEGNMESAKAVDLIPWMEYEFRVVATNTLGTGEPSIPSNRIKTDGAAPNVAPSDVGGGGG
TNRELTITWAPLSREYHYGNNFGYIVAFKPFDGEEWKKVTVTNPDTGRYVHKDETMTPST
AFQVKVKAFNNKGDGPYSLIAVINSAQDAPSEAPTEVGVKVLSSSEISVHWKHVLEKIVE
SYQIRYWAGHDKEAAAHRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPSSDVIET
FTRKAPPSQPPRIISSVRSGSRYIITWDHVVALSNESTVTGYKILYRPDGQHDGKLFSTH
KHSIEVPIPRDGEYVVEVRAHSDGGDGVVSQVKISGVSTLSSGLLSLLLPSLGFLVFYSE
F
NT seq 3066 nt   +upstreamnt  +downstreamnt
atgaaaaccccattgctggtcagtcatctcctgctaatctccttaacatcctgtctagga
gagtttacatggcacagaagatatggtcatggagtttctgaggaggataaaggatttgga
cccatttttgaagagcaaccaatcaataccatttacccagaagagtcactggaaggcaaa
gtgtcgctcaactgccgggcacgggcaagcccatttccggtttacaagtggagaatgaat
aacggggacgttgacctgacgaacgatcgatacagcatggtcggagggaaccttgttatc
aataaccctgacaaacagaaagacgcaggaatatactactgcttggcgtccaacaactac
gggatggtcagaagcaccgaggccaccctgagctttgggtatcttgacccctttcctcct
gaggatcgtcctgaagtgaaggtgaaggaagggaagggcatggtgcttctctgcgaccct
ccctaccacttcccagacgatcttagctaccgctggcttctgaatgaatttcccgtcttt
atcacaatggataagcgaagattcgtgtctcagaccaacggtaatctctacatcgcgaac
gttgagtcttctgatagaggcaactattcctgcttcgtgtccagcccttctattacaaag
agcgtgttcagcaaatttatacccctcattccgatacctgagcgaacaacgaagccatat
cctgctgacattgtagtgcagttcaaggacatatacaccatgatgggccaaaatgtgacc
ttagagtgcttcgctcttggaaaccctgttcctgatattcggtggcggaaggtgctagaa
cccatgcctaccacagctgagatcagcacctcaggggctgtcctcaagatcttcaacatc
cagctagaagatgaagggctctacgagtgcgaggctgagaacattaggggaaaggacaag
caccaggcaagaatttatgttcaagcatttcctgaatgggtagagcatatcaatgacact
gaagtggacataggcagtgacctctactggccttgtgtggccacagggaagcccatccct
accatcaggtggctgaaaaatgggtacgcgtatcacaaaggggaactgaggctgtatgac
gtgacttttgaaaacgccgggatgtaccagtgcatagcagaaaacgcgtatgggaccatt
tatgcaaatgctgaactcaagatcctggctttagctccaacttttgaaatgaatcccatg
aagaagaagatcctggctgcgaaaggaggaagggttatcattgagtgcaaacccaaggct
gcaccaaaacccaagttttcatggagcaaagggacagagtggcttgtcaacagcagcaga
atactcatatgggaagatggtagcttggaaatcaataatattacaagaaatgatggagga
atctatacatgctttgcagaaaacaacagagggaaagctaatagcaccgggactctggtg
atcacaaatcccacacgaatcattttggccccaatcaatgctgatatcactgttggagaa
aacgctaccatgcagtgtgctgcctcctttgatccttccttggatctcacgttcgtctgg
tctttcaatggctacgtgattgactttaacaaggaaattacaaatattcattaccagagg
aattttatgctcgacgccaatggggaactgctcatccgaaacgcgcagctgaaacacgca
ggacggtacacgtgcacagcgcagacaatcgtggacaattcttcagcttcagctgacctt
gtcgtacgaggccccccaggccctccaggtggcctgagaatagaagacatcagagctacc
tctgtggcactgacttggagccgtggttcagacaatcacagccctatctctaaatacact
atccagaccaagacgattctctcagatgactggaaagacgcaaagacggatcccccaatc
attgaaggaaacatggagtcagcaaaagcagtcgatttgatcccatggatggagtacgaa
tttcgagtggtagcaaccaatactttggggactggagagcccagcataccctcaaacagg
atcaaaaccgatggcgctgcaccaaatgtggctccctcagacgtaggtggtgggggcgga
accaacagagagctgacaataacgtgggcgcctttgtccagagaataccattatggtaac
aattttggttacatagtggcattcaagccattcgatggagaagagtggaagaaagtgacc
gttaccaatccggatactggccgctacgtccacaaggacgaaaccatgaccccttccacc
gcgtttcaagtcaaagtgaaggcattcaacaataaaggagacgggccctacagcctcata
gctgtcatcaactcagcacaagacgctcccagtgaagcccccacagaagtaggggtcaaa
gtgctatcgtcctctgagatctctgtccattggaagcacgttctagagaagattgtggaa
agctatcaaattcggtactgggccggtcacgacaaagaagcagcggcgcacagagttcaa
gtcaccagccaggagtactcagccaggctggagaaccttctgccggacactcagtacttc
atagaggtgggagcctgtaacagcgcggggtgcggaccttccagcgacgtgatcgagacc
ttcaccagaaaagcccctcccagccaaccaccaaggatcatcagttccgtgaggtctggc
tcccgatacataatcacgtgggatcatgtcgtggcactatccaatgaatctacagtgaca
ggctacaagatactctatagacctgacggccaacatgacggtaagctgttctccacgcac
aagcactccatagaagtccccatccccagagacggagagtacgtagtcgaagttcgagca
cacagtgatggaggagatggggtagtgtcccaagtcaaaatttcaggtgtgtccacgctg
tcatcgggtctcctcagcttgctcctgccctcccttggctttcttgtcttctattcggaa
ttctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (18)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (15)   
DNA sequence (27)   
   RefSeq(nuc) (15)   
   GenBank (6)   
   EMBL (6)   
Protein domain (12)   
   Pfam (12)   
All databases (68)   

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