KEGG   Rattus norvegicus (rat): 117262
Entry
117262            CDS       T01003                                 
Symbol
Psmc4
Name
(RefSeq) 26S proteasome regulatory subunit 6B
  KO
K03063  26S proteasome regulatory subunit T3
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03050  Proteasome
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05017  Spinocerebellar ataxia
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05169  Epstein-Barr virus infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    117262 (Psmc4)
 09160 Human Diseases
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    117262 (Psmc4)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    117262 (Psmc4)
   05012 Parkinson disease
    117262 (Psmc4)
   05014 Amyotrophic lateral sclerosis
    117262 (Psmc4)
   05016 Huntington disease
    117262 (Psmc4)
   05017 Spinocerebellar ataxia
    117262 (Psmc4)
   05020 Prion disease
    117262 (Psmc4)
   05022 Pathways of neurodegeneration - multiple diseases
    117262 (Psmc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:rno03051]
    117262 (Psmc4)
Proteasome [BR:rno03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    ATPase subunits
     117262 (Psmc4)
SSDB
Motif
Pfam: AAA Prot_ATP_ID_OB_C AAA_lid_3 AAA_5 AAA_2 AAA_16 RuvB_N AAA_22 nSTAND3 DUF815 AAA_28 RNA_helicase Mg_chelatase AAA_14 TIP49 AAA_18 NTPase_1 ATPase_2 NACHT AAA_3 IstB_IS21 AAA_7 TsaE AAA_33 Parvo_NS1 AAA_25 AAA_17 Zeta_toxin NB-ARC AAA_24 ABC_tran DUF3450 AAA_30 GrpE
Other DBs
NCBI-GeneID: 117262
NCBI-ProteinID: NP_476463
RGD: 621102
Ensembl: ENSRNOG00000018994
UniProt: Q63570 A6J9G3
Structure
Position
1:complement(92476690..92485268)
AA seq 418 aa
MEEIGILVEKIQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEY
IKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTID
RELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREA
VELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYL
GEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD
QNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDL
EDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHEFYK
NT seq 1257 nt   +upstreamnt  +downstreamnt
atggaggagataggcattttggtggagaaaattcaggatgagatcccagcactgtccgtg
tctcggccgcagaccggcctgtcctttctgggacccgaacctgaggacctggaggaccta
tacagccgctacaagaagctacagcaagagctggagttcctggaggtgcaggaggagtat
atcaaggatgagcagaagaacctgaagaaggagttcctccatgcgcaggaggaggtaaag
cgaatccagagcattccgttggtcattggtcagtttttggaagctgtggatcagaacaca
gccattgtgggctctaccacaggctctaactactatgtgcgcatcctgagtaccattgat
cgggagctgctcaaacccaatgcctcagtggccctgcacaagcacagcaacgcactggtg
gatgtgctgcctcccgaggccgacagcagcatcatgatgctcacctcagaccagaagccc
gacgtgatgtacgccgatattggaggcatggacatccagaagcaggaggtgcgggaggct
gtggaactaccactgacgcacttcgagctctacaagcagattggcatcgatcctccccga
ggtgtcctcatgtatggcccacctggctgtggaaagaccatgttagcgaaggctgtggca
catcacacgacagctgcatttatccgtgtggtgggctcagagtttgttcagaagtacctg
ggtgagggcccccgaatggtccgggatgtgttccgcctggccaaggagaatgcacctgcc
atcatcttcatagatgaaattgatgccattgccaccaagagattcgatgcccagacagga
gctgacagggaggttcagaggatcctgctggagctactgaatcaaatggatggatttgac
caaaacgtcaatgtgaaggtaatcatggccacaaacagagcagacaccttggatccagct
ctacttcggccaggacgcctggaccgcaaaattgaattcccactccctgatcgtcgccag
aagaggttgattttctccaccatcaccagcaagatgaacctttctgaggaggtcgaccta
gaagactatgtggcccgcccagataagatttcaggagccgatatcaactccatctgtcag
gagagtggaatgttggctgtccgtgagaaccgctacattgtcctggccaaggacttcgag
aaagcatacaagaccgtgatcaagaaagatgagcaggaacatgagttttacaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (9)   
   KEGG PATHWAY (9)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (10)   
   RefSeq(nuc) (2)   
   GenBank (4)   
   EMBL (4)   
3D Structure (5)   
   PDB (5)   
Protein domain (34)   
   Pfam (34)   
All databases (72)   

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