KEGG   Rattus norvegicus (rat): 170956
Entry
170956            CDS       T01003                                 
Symbol
Ythdc1
Name
(RefSeq) YTH domain-containing protein 1
  KO
K20100  YTH domain-containing protein 1
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    170956 (Ythdc1)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    170956 (Ythdc1)
SSDB
Motif
Pfam: YTH
Other DBs
NCBI-GeneID: 170956
NCBI-ProteinID: NP_596914
RGD: 621706
Ensembl: ENSRNOG00000001996
UniProt: Q9QY02
Structure
Position
14:complement(21540276..21570724)
AA seq 738 aa
MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSERMESIDTKRQ
KPSIHSRQLISKPLSSSVSNNKRIVSTKGKSVTEYKNEEYQRSERNKRLDADRKIRLSSS
SSREPYKSQPEKPCLRKRDSERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEGNSEEYG
SDHETGSSASSEQGNNTENEEEGGEEDVEEDEEVDEDGDDDEEVDEDAEEEEDEEEDEEE
EDEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEK
KKERKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKSVLQDARF
FLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSS
ESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDG
QEIELECGTQLCLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRP
EDYDIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVDSFTNLIPNRRFSGVRRDVFLNGSY
NDYVREFHNMGPPPPWQGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYR
DKRVHDYDMRVDDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERER
ERICDRDRDRGERGRYRR
NT seq 2217 nt   +upstreamnt  +downstreamnt
atggcggccgacagccgggaggagaaagatggggaacttaatgttttagatgatattttg
actgaagtaccagaacaggatgatgaactgtataatccagagagtgaacaagataaaaat
gagaaaaaaggatcaaaaagaaaaagtgaaagaatggaatctattgacaccaagcgacag
aagccttctatccattcaagacaactgatttctaagccactaagctcatctgttagcaat
aataaaagaatagttagtacaaaaggaaagtcggttacagaatataaaaatgaggaatat
caaagatctgaaaggaacaagcgtctagatgctgatcgaaaaattcgtctgtcaagcagt
tcctctagagaaccttacaagagtcaaccagaaaaaccttgtctacggaaaagggattct
gaaagaagggccaagtctcctacaccagatggttctgagagaattgggcttgaagttgat
agacgtgcaagcagatccagccagtcttcaaaggaagaggggaactctgaggagtatggc
tctgaccacgagacaggaagcagtgcttcttctgaacagggcaacaacactgagaatgag
gaggaaggaggggaagaagatgtagaggaagatgaagaggtagatgaagatggagatgat
gatgaggaagtggatgaagatgcggaggaggaggaggacgaggaagaagatgaggaggag
gaggatgaggaagaagaagaggaagaggaagaagaatatgaacaggatgagagagatcag
aaggaagaagggaatgattatgacacccgtagtgaggccagtgattctggttctgagtct
gtttccttcacagatggatctgtcaggtctggttcaggaacagatggatcagatgagaaa
aagaaggaaaggaagagagctcgaggcatatcacccattgtctttgatagaagtggcagt
tctgcatcagagtcatatgcaggttcagaaaagaagcatgagaaattatcatcttccgtt
cgtgctgtccgaaaagatcaaaccagtaaactcaaatctgtccttcaggatgcaagattt
ttcctcataaagagtaacaaccatgagaatgtgtctcttgccaaagcaaagggtgtatgg
tccacattacctgtaaatgagaagaaattaaatcttgcgtttagatctgcaaggagtgtt
atattaatattttctgtcagggaaagtggaaagtttcaaggttttgccagattgtcatca
gaatcgcatcatggtggctctcctatacattgggtgcttccagcaggaatgagtgctaaa
atgcttggaggtgtttttaaaattgactggatttgcaggcgtgaattaccctttactaag
tcagctcatctcaccaatccctggaatgaacataagccagtaaagattggacgtgatgga
caggaaattgaacttgaatgtggaacccagctttgtcttctgtttccccctgatgaaagt
attgacttgtatcagctcattcataaaatgcgtcacaagagaagaatgcattctcagcct
cgatcaagaggacgtccatcccgtcgagaaccagtccgggatgtgggaaggcgtcgacca
gaagattatgatattcataacagcagaaagaaaccaaggattgactatccccctgagttt
caccagagaccagggtatttaaaggatccccgataccaggaagttgacagtttcacaaat
cttattcccaacagacgattttcaggagttcgccgagatgtgtttttaaatgggtcctac
aatgattatgtgagggaatttcataacatgggaccaccgcctccttggcaaggaatgcct
ccttacccgggaatagaacagcctccacaccatccctactaccagcaccatgccccgcct
cctcaagcccaccccccttactcaggacaccatccggtaccacatgaagcaagatacaga
gataaacgagtacatgactatgatatgagggttgatgatttccttcgccgcacacaagcc
gttgtcagtggtcggagaagtagaccccgagaaagagatcgggagcgagagcgagaccgc
cctagagataacagaagagatagagagcgagacagaggtcgtgatcgagaaagagagaga
gaaagaatatgtgatcgggacagagaccgaggggaaagaggtcgttatcgaagataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (13)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (11)   
DNA sequence (15)   
   RefSeq(nuc) (11)   
   GenBank (2)   
   EMBL (2)   
3D Structure (1)   
   PDB (1)   
Protein domain (1)   
   Pfam (1)   
All databases (39)   

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