KEGG   Rattus norvegicus (rat): 171052
Entry
171052            CDS       T01003                                 
Symbol
Mmp13
Name
(RefSeq) collagenase 3 precursor
  KO
K07994  matrix metalloproteinase-13 (collagenase 3) [EC:3.4.24.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04657  IL-17 signaling pathway
rno04926  Relaxin signaling pathway
rno04928  Parathyroid hormone synthesis, secretion and action
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09151 Immune system
   04657 IL-17 signaling pathway
    171052 (Mmp13)
  09152 Endocrine system
   04926 Relaxin signaling pathway
    171052 (Mmp13)
   04928 Parathyroid hormone synthesis, secretion and action
    171052 (Mmp13)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rno01002]
    171052 (Mmp13)
Peptidases and inhibitors [BR:rno01002]
 Metallo peptidases
  Family M10
   171052 (Mmp13)
SSDB
Motif
Pfam: Peptidase_M10 Hemopexin PG_binding_1 Reprolysin_3 Reprolysin_4 Reprolysin_5 DUF4953
Other DBs
NCBI-GeneID: 171052
NCBI-ProteinID: NP_598214
RGD: 620196
Ensembl: ENSRNOG00000008478
UniProt: A6JN28 G3V742
Position
8:12782829..12793108
AA seq 472 aa
MHSAILATFFLLSWTHCWSLPLPYGDDDDDDLSEEDLEFAEHYLKSYYHPVTLAGILKKS
TVTSTVDRLREMQSFFGLDVTGKLDDPTLDIMRKPRCGVPDVGEYNVFPRTLKWSQTNLT
YRIVNYTPDISHSEVEKAFRKAFKVWSDVTPLNFTRIHDGTADIMISFGTKEHGDFYPFD
GPSGLLAHAFPPGPNLGGDAHFDDDETWTSSSKGYNLFIVAAHELGHSLGLDHSKDPGAL
MFPIYTYTGKSHFMLPDDDVQGIQSLYGPGDEDPNPKHPKTPEKCDPALSLDAITSLRGE
TMIFKDRFFWRLHPQQVEPELFLTKSFWPELPNHVDAAYEHPSRDLMFIFRGRKFWALNG
YDIMEGYPRKISDLGFPKEVKRLSAAVHFEDTGKTLFFSGNHVWSYDDANQTMDKDYPRL
IEEEFPGIGDKVDAVYEKNGYIYFFNGPIQFEYSIWSNRIVRVMPTNSLLWC
NT seq 1419 nt   +upstreamnt  +downstreamnt
atgcattcagctattctggccaccttcttcttgttgagttggactcactgttggtccctg
ccccttccctatggtgatgatgatgatgatgacttgtctgaggaagatcttgagtttgca
gagcactacttgaaatcatactaccatcctgtgactcttgcgggaatcctgaagaagtct
acagtgacctctacagttgatagactccgagaaatgcagtctttctttggcttagatgtg
actggcaaacttgatgatcctaccttagacatcatgagaaaaccaagatgtggagtgcct
gatgtgggtgaatacaatgttttccctcgaacactcaaatggtcccaaacaaacttaact
tacagaattgtgaactacacccctgatatatcccattctgaagtggagaaggccttcaga
aaagccttcaaggtctggtctgatgtgacacctctgaattttaccaggatccatgatggc
actgctgatatcatgatatcttttggaactaaagaacatggtgacttctacccatttgat
gggccttctggtcttctggcacacgcttttcctcctggaccaaaccttggcggggacgcc
cattttgatgatgatgaaacctggacaagcagctccaaaggctacaacttatttattgtt
gctgcccatgagcttggccactccctcggtctggaccactccaaggaccctggagccctg
atgtttcccatctatacctacactggcaaaagccatttcatgctcccagatgatgacgtt
caaggaatccagtctctctatggtccaggagatgaagaccccaaccctaagcaccccaaa
acaccagagaagtgtgacccagccctatcccttgatgccattactagtctccgaggagaa
accatgatctttaaagacagattcttctggcgtctgcaccctcagcaggttgagcctgaa
ctgtttttgaccaagtccttttggccagaacttcccaaccatgtggatgctgcatacgag
catccatcccgagacctcatgttcatctttagagggagaaaattctgggccctgaatggg
tatgacattatggagggttatcccagaaaaatatctgacctgggatttccaaaagaggtg
aaaaggctcagtgctgcggttcactttgaggacacggggaagaccctcttcttctcaggg
aaccacgtgtggagttatgatgatgctaaccagactatggacaaagactatccccgcctc
atagaagaagaattccctggaattggcgacaaagtagatgctgtctatgagaaaaatggc
tatatctactttttcaatgggcccatacagtttgaatacagtatctggagtaatcgcatt
gtgagagtcatgccaacaaattccttattgtggtgttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (25)   

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