KEGG   Rattus norvegicus (rat): 171350
Entry
171350            CDS       T01003                                 
Symbol
Pabpc1
Name
(RefSeq) polyadenylate-binding protein 1
  KO
K13126  polyadenylate-binding protein
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    171350 (Pabpc1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    171350 (Pabpc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    171350 (Pabpc1)
   03041 Spliceosome [BR:rno03041]
    171350 (Pabpc1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     171350 (Pabpc1)
   mRNA cycle factors
    Stress granule specific factors
     171350 (Pabpc1)
Spliceosome [BR:rno03041]
 Complex C
  Other components
   Complex C specific factors
    171350 (Pabpc1)
SSDB
Motif
Pfam: RRM_1 PABP RRM_7 RRM_5 RRM_occluded RRM_3 YflT
Other DBs
NCBI-GeneID: 171350
NCBI-ProteinID: NP_599180
RGD: 619838
Ensembl: ENSRNOG00000008639
UniProt: Q9EPH8 A6HR30
Position
7:complement(69662513..69674806)
AA seq 636 aa
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq 1911 nt   +upstreamnt  +downstreamnt
atgaaccccagcgcccccagctaccccatggcctctctgtacgtgggggacctgcacccc
gacgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccttgggctacgcgtacgtgaacttccag
cagccggcggacgcggaacgtgctttggacaccatgaattttgatgttataaagggcaag
ccagtacgcatcatgtggtctcagcgtgatccatcacttcgtaaaagtggagtaggcaac
atattcattaaaaatttggacaaatccattgacaataaagcactgtatgatacgttttct
gcgtttggtaacatcctttcatgtaaggtggtttgtgatgaaaatggctccaagggctat
ggatttgtacattttgaaacacaggaagcagctgaaagagctattgaaaaaatgaatgga
atgcttctaaatgatcgtaaagtgtttgttggtcgatttaaatctcggaaggaacgagaa
gcagaacttggagcaagggcaaaggagttcaccaatgtttacatcaagaactttggagaa
gacatggatgatgagcgtcttaaggaactctttggcaagtttgggcctgccttaagtgtg
aaagtaatgacagatgaaagtggaaaatccaaaggatttggatttgtaagctttgaaagg
catgaagatgcgcagaaagctgtggatgagatgaatgggaaggagctcaatggaaaacag
atttatgttggtcgagctcagaaaaaagtggaacggcagacggaacttaagcgcaaattt
gagcagatgaagcaagacaggatcaccagatatcagggtgttaacctttatgtgaaaaat
cttgatgacggaattgatgatgagcgtctccggaaagagttttctccatttggtacaatc
actagtgcaaaagtaatgatggagggtgggcgcagcaaaggatttggttttgtatgtttc
tcctcccctgaagaagccactaaagcagttacggagatgaatggtagaattgtggccacc
aagccactctatgtagctttagctcagcgcaaagaagagcgccaggctcacctcactaac
cagtatatgcagaggatggcaagtgtacgagctgtgcccaatcctgtgatcaacccctac
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctcctagccaaattgctcaactaagaccaagtcctcgctggactgctcag
ggtgccagacctcatccattccagaatatgcccggtgctatccgcccagctgctcctaga
ccaccatttagtacgatgagaccagcttcctcacaggttccacgagtcatgtcaacacag
cgtgttgctaacacatcaacacagacaatgggtccacgtcctgcagctgctgctactgca
gccactcctgctgtccgcactgttccccagtataaatacgctgcgggagtccgcaatccc
cagcaacatcttaatgcacagccacaagttaccatgcaacagcctgcggttcatgtgcaa
ggtcaagaacctttaactgcttccatgttggcatctgcacccccgcaagagcaaaagcaa
atgttgggtgaacggctgtttcctcttattcaagccatgcacccttctcttgctggcaaa
attactggcatgctgttggagattgataactcagaattgcttcacatgcttgagtctcca
gagtctctccgctcaaaggtcgatgaagctgtagctgtactacaagcccaccaagcgaaa
gaggctgcccagaaagcagtgaacagtgccactggtgttccaactgtctaa

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