KEGG   Rattus norvegicus (rat): 171379
Entry
171379            CDS       T01003                                 
Symbol
Smarca4
Name
(RefSeq) transcription activator BRG1
  KO
K11647  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03082  ATP-dependent chromatin remodeling
rno04714  Thermogenesis
rno05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    171379 (Smarca4)
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    171379 (Smarca4)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    171379 (Smarca4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    171379 (Smarca4)
   03036 Chromosome and associated proteins [BR:rno03036]
    171379 (Smarca4)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     171379 (Smarca4)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   HDAC complexes
    REST complex
     171379 (Smarca4)
  Chromatin remodeling factors
   BAF complex
    171379 (Smarca4)
   PBAF complex
    171379 (Smarca4)
   GBAF(ncBAF) complex
    171379 (Smarca4)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C SnAC Bromodomain HSA BRK QLQ ResIII HDA2-3 DEAD Htt_C-HEAT DUF2009
Other DBs
NCBI-GeneID: 171379
NCBI-ProteinID: NP_599195
RGD: 621728
Ensembl: ENSRNOG00000009271
Position
8:28438370..28535071
AA seq 1613 aa
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPMPTQG
PGGYPQDNMHQMHKPMESMHEKGMPDDPRYNQMKGMGMRSGAHTGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPLVPLHQKQSRITPIQKPRG
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
QHAKDFREYHRSVTGKLQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
GSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEE
DEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAE
VERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKR
KRDSEAGSSTPTTSTRSRDKDEESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYK
DSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQ
NAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVK
VKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSDEEQEEDRSGSGSEED
NT seq 4842 nt   +upstreamnt  +downstreamnt
atgtctactccagacccacccctgggtggaacccctcggcctggtccttccccaggccct
ggtccttcacctggtgcaatgctgggtcctagccctggcccctcaccaggttctgcccac
agcatgatggggccaagcccaggacctccttcagcaggacatcccatgcccacccagggg
cctggagggtacccccaggacaacatgcatcaaatgcacaagcctatggagtccatgcac
gagaagggcatgcctgatgacccacgatacaaccaaatgaaagggatgggcatgcgatca
ggggcccacacaggtatgggacctccgcctagtcccatggaccagcattctcaaggttac
ccctcacccttaggtggctctgaacatgcctccagtcctgtcccggccagcggcccatct
tcaggccctcagatgtcctctgggccaggaggggccccactagatggttctgacccccag
gccttggggcagcaaaacagaggcccaaccccatttaaccagaaccagctgcatcaactc
agagctcagataatggcctataagatgttggccaggggccagccattgcccgaccacctg
cagatggccgttcaaggcaagcggccgatgcctggaatgcagcagcagatgccaacacta
cctccaccttcagtgtctgccacaggacctggacccggccctggccctggccctggccca
ggtccaggaccagcccctccgaattacagtagaccccatggtatgggagggcccaacatg
cctcctccaggaccctcaggtgtgccccccgggatgcctggtcagcctcctggagggcct
cccaagccatggcctgaaggacccatggccaatgctgctgcccccacaagcaccccacag
aagctgattcccccgcaaccaacaggccgcccttcacctgcacctcctgctgtcccgcct
gctgcctcacctgtaatgccaccacaaacacagtccccagggcagccagcccagcctgct
ccattggtgccattgcaccagaagcagagccgcatcacccccatccagaagccccggggc
ctggaccctgtggagatcctacaggagcgggagtacaggctgcaggctcgaatcgcacac
agaattcaggaacttgaaaacctccctgggtccctggctggggaccttcgaaccaaagca
accatcgaactcaaggcccttaggttgctgaacttccagaggcagctgcgccaggaggtg
gtggtgtgcatgcgaagagacacagccctagagacagccctcaatgccaaggcttataag
cgcagcaaacggcagtcactgcgggaggcccgcatcactgagaagctggagaagcagcag
aagattgaacaggaacgcaagcgtcgtcagaagcaccaggagtacctcaacagcattctg
cagcatgccaaggacttcagggagtatcacagatcagtcacaggcaaactccagaaactc
accaaggctgtggccacctaccatgccaacactgagcgggagcaaaagaaagaaaatgag
cgcatcgagaaggaacggatgcgaaggcttatggctgaagacgaggagggctaccgcaag
ctcattgaccagaagaaggacaagcgcctggcctacctcctgcagcagacagatgagtat
gtggccaacctcacagagctggtgcggcagcacaaagctgcccaggtagccaaggagaag
aagaagaaaaagaaaaagaagaaggcagaaaatgctgaagggcagacacctgccattgga
cccgacggtgagcctctggatgagaccagccagatgagtgacctccctgtgaaggtgatc
catgtggagagtggcaagatcctcactggcacagatgccccaaaagccgggcagctggaa
gcctggcttgagatgaacccagggtatgaagtagctcccagatcagatagtgaagaaagt
ggctctgaagaggaggaggaggaggaggaagaggagcagcctcagcccgcacagccccct
acactgcctgtggaagaaaagaagaagattccagacccagacagcgatgatgtctctgag
gtggacgctcgacacattattgagaacgccaagcaggatgtggacgatgagtacggcgtg
tcccaggcccttgctcgtggtctgcagtcctactatgctgtggcccatgcagtgacagag
agagtagataagcagtcagccctcatggtcaacggtgtcctcaaacagtaccagatcaag
ggtctggagtggctggtgtccctgtacaacaacaacctgaacggcatcctggctgatgag
atggggctggggaagaccatccaaaccattgcactcatcacgtacctcatggagcacaag
cgcatcaatgggcccttcctcatcatcgttcctctctcgacgctgtcaaactgggcatat
gaatttgacaagtgggccccctctgtggtgaaggtttcctacaagggctctccagctgcc
agacgagcttttgtcccccagcttcgcagcggcaagttcaatgtcttattgaccacctac
gagtatatcatcaaagacaaacatatcctggccaagatccgctggaagtacatgattgtg
gatgaaggccaccgcatgaagaaccaccactgcaaattgacacaggtccttaatacacac
tacgtggcccctcggcgcctgcttctcacaggcacgccactgcagaacaagctacctgag
ctctgggcactgctgaacttcctgctccccactatcttcaagagctgcagcaccttcgaa
cagtggttcaatgcaccctttgccatgactggagagaaggtggacctgaatgaggaggag
accatcctcattattcgtcgtctacacaaggtgctacggcccttcctgctgcggcgtctc
aagaaggaagttgaagcccagctccctgagaaggtagaatatgtcatcaaatgtgacatg
tcagccctgcagcgtgtgctctaccgtcacatgcaggccaaaggtgtgctgttgactgac
ggctctgagaaggacaagaagggcaaaggtggcaccaagacgctgatgaacactatcatg
cagctgcgcaagatctgcaaccacccctacatgttccagcacattgaggagtccttctct
gagcacctggggttcaccggtggcatcgtgcaaggattggacctatatcgtgcctcaggg
aaatttgaacttcttgatagaattctacccaaactccgtgcaacaaaccataaagtgcta
ctcttctgccaaatgacctccctcatgaccatcatggaagactactttgcataccgtggc
ttcaaatacctcaggcttgacggaaccacaaaagcagaagaccggggcatgctgttgaaa
acctttaatgagcctggctctgagtatttcattttcctactcagtacccgtgctgggggg
ctgggcctgaatctgcagtcagctgacactgtgatcatctttgacagtgactggaatcct
caccaggacctgcaagcacaggatcgtgcccatcggattgggcagcagaatgaggtgcgt
gtgcttcgcctgtgcaccgtcaacagtgtggaagagaagatactggctgctgctaaatac
aaactcaatgtggatcagaaggtcatccaggcaggcatgtttgaccagaagtcttccagc
catgagaggcgtgccttcctgcaggccatcctggagcacgaggagcaggacgaggaggaa
gatgaggtgcctgatgatgagaccgtcaaccagatgattgcccggcacgaagaagaattt
gacctcttcatgcgcatggacttggaccgccggcgtgaagaagcccgcaaccccaagcgg
aagccacgcctgatggaagaggatgagcttccatcctggatcatcaaggatgatgcagag
gtagagcggctgacatgtgaagaggaagaggaaaagatgttcggccgtggttctcgccac
cgcaaggaggtagactacagcgactcactgacagagaagcagtggctcaaggctatcgag
gagggcacgctggaggagatcgaagaggaggtccggcagaagaaatcttcacgtaagcgt
aagcgagacagcgaggccggctcctccaccccgaccaccagcacccgcagccgtgacaag
gacgaggagagcaaaaagcagaagaaacgtgggcggccacctgccgagaagctgtcccca
aacccacctaacctcaccaagaagatgaagaagatcgtggacgctgtgatcaagtacaaa
gacagtagtggacgtcagctcagtgaggtgttcattcagctcccctctcgcaaggaactt
cctgagtactatgagctcatccggaaacctgtggacttcaagaagatcaaggaacgcatc
cgaaaccacaagtaccgcagcctcaatgacctggagaaggacgtgatgttgctgtgccag
aatgctcagaccttcaacctcgagggctccctgatctacgaggactccatcgtcctgcag
tctgtcttcaccagcgtgcggcagaaaatcgagaaggaggatgacagtgaaggcgaggaa
agcgaggaggaagaagagggcgaggaggaaggctctgagtctgagtcccgctctgtcaag
gtaaagatcaagctgggtcgaaaggagaaggcccaggaccgactcaaggggggcaggcgg
cggccaagccgggggtcccgggccaagcctgtcgtgagtgacgatgacagtgatgaggag
caggaggaggaccgctcaggaagtggcagcgaggaagactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (11)   
   RefSeq(pep) (11)   
DNA sequence (19)   
   RefSeq(nuc) (11)   
   GenBank (4)   
   EMBL (4)   
Protein domain (12)   
   Pfam (12)   
All databases (55)   

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