KEGG   Rattus norvegicus (rat): 192183
Entry
192183            CDS       T01003                                 
Symbol
Nectin1
Name
(RefSeq) nectin-1 precursor
  KO
K06081  poliovirus receptor-related protein 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03266  Virion - Herpesvirus
rno04514  Cell adhesion molecules
rno04520  Adherens junction
rno05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03266 Virion - Herpesvirus
    192183 (Nectin1)
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    192183 (Nectin1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04520 Adherens junction
    192183 (Nectin1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    192183 (Nectin1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:rno04515]
    192183 (Nectin1)
   04090 CD molecules [BR:rno04090]
    192183 (Nectin1)
Cell adhesion molecules [BR:rno04515]
 Immunoglobulin superfamily
  Nectin family
   192183 (Nectin1)
CD molecules [BR:rno04090]
 Proteins
  192183 (Nectin1)
SSDB
Motif
Pfam: C2-set_2 V-set Ig_3 Ig_2 ig I-set
Other DBs
NCBI-GeneID: 192183
NCBI-ProteinID: NP_001093946
RGD: 620791
Ensembl: ENSRNOG00000006403
UniProt: A6J3U6 F1LNP8
Position
8:52998662..53061745
AA seq 515 aa
MARMGLAGAAGRWWGLALGLTAFFLPGTHTQVVQVNDSMYGFIGTDVILHCSFANPLPTV
KITQVTWQKASNGSKQNMAIYNPTMGVSVLPPYEKRVEFLRPSFIDGTIRLSHLELEDEG
MYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRARKGQDDKVLVATCTSANGKPP
SVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHRQSLACIVNYHLDRFRESLT
LNVQYEPEVTIEGFDGNWYLQRTDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTL
FFRGPINYSLAGTYICEATNPIGTRSGQVEVNITEFPYTPTPEHGRRAGQMPTAIIGGVA
GSVLLVLIVVGGIIVALRRRRHTFKGDYSTKKHVYGNGYSKAGIPQHHPPMAQNLQYPDD
SDDEKKAGPLGGSSYEEEEEEEGGGGGERKVGGPHPKYDEDAKRPYFTVDEAEARQDGYG
DRTLGYQYDPEQLDLAENMVSQNDGSFISKKEWYV
NT seq 1548 nt   +upstreamnt  +downstreamnt
atggctcggatggggcttgcgggcgccgctggacgctggtggggactcgctctcggcttg
accgccttcttcctcccaggcactcacacgcaggtggtgcaggtgaacgactccatgtat
ggcttcatcggcacagatgtgattctgcactgcagctttgccaacccactgcccactgtg
aagatcacccaggtcacatggcagaaggcctccaatggctccaagcagaacatggccatc
tacaacccaacgatgggtgtttccgtgctgcctccctacgagaaacgagtggagttcctg
cggccctccttcattgacggcaccatccgcctctcccacctggagctggaggacgagggc
atgtacatctgtgaatttgccaccttccccacgggcaaccgggaaagccagctcaatctc
actgtgatggccaaacccaccaactggatcgagggcactcaggctgtgcttcgagccagg
aagggacaggatgacaaggtcctggtggccacctgcacctcagccaacgggaagcctccc
agcgtggtgtcctgggaaacgaggctgaagggcgaggcagagtaccaggaaattcggaac
cccaacggcacagtgacagtcatcagccgttaccgcttggtgcccagcagggaagcccac
cggcagtccctggcctgcatcgtcaactatcacctggaccgcttcagggagagcctgaca
ctcaacgtgcagtatgaacctgaggtgaccattgaaggcttcgatggcaactggtaccta
cagcggacagatgtaaagcttacgtgcaaagcagacgctaatccgccggccactgagtac
cactggaccacgttgaatggctctctccccaagggtgtagaggcccagaacagaaccctc
ttcttccggggacctatcaactacagcctagcaggaacctacatctgtgaggccaccaac
cctattggcacccgctctggccaggtggaggtcaatatcacagaattcccctacaccccg
actcctgaacatgggcggcgcgcggggcagatgcccacagccatcattgggggcgtggca
gggagtgtcctgctggtgctgattgtggttggagggatcatagtggccctgcgccggcgc
cggcacaccttcaagggtgactacagcaccaagaaacacgtatacggcaacggctacagc
aaggcaggaatcccccagcatcacccgcccatggcacagaacctgcagtacccggatgac
tcggatgatgaaaagaaggccggcccattgggcgggagcagctatgaggaggaagaagag
gaggagggcggtggaggaggcgaacgcaaagtgggcggcccccaccccaaatatgacgag
gacgccaaacggccctacttcactgtggatgaggctgaggcccgtcaggacggctatggg
gaccggactctgggctaccaatacgaccctgaacagctggacttggctgagaacatggtt
tctcagaacgacgggtctttcatttccaagaaagagtggtatgtgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (28)   

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