KEGG   Rattus norvegicus (rat): 245922
Entry
245922            CDS       T01003                                 
Symbol
Nup58
Name
(RefSeq) nucleoporin p58/p45
  KO
K14307  nucleoporin p58/p45
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03013  Nucleocytoplasmic transport
rno05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    245922 (Nup58)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    245922 (Nup58)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    245922 (Nup58)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     245922 (Nup58)
SSDB
Motif
Pfam: Nucleoporin_FG2 FapA PSY3 Nup49_C Siah-Interact_N
Other DBs
NCBI-GeneID: 245922
NCBI-ProteinID: NP_620791
RGD: 631334
Ensembl: ENSRNOG00000012644
UniProt: P70581 A6K695
Structure
Position
15:complement(38534340..38583959)
AA seq 585 aa
MATGFSFGSGTLGSTTVAPGGTGTGSGFSFGASSTPSVGLNFGTLGSSATPASTSTSASG
FGTGLFGSKPGTGFTLGGTSAGTTATTSASTTGFSLGFSKPAASATPFALPVTSTTASGL
TLSSALTSAPAASTGFTLNNLGATPATTTAASTGLSLGGALAGLGGSLFQSGNTATSGLG
QNALSLSLGTATPTSAASSEGLGGIDFSTSSDKKSDKTGTRPEDSKALKDENLPPVICQD
VENLQKFVKEQKQVQEEISRMSSKAMLKVQEDIKALKQLLSLAASGLQRNTLNIDKLKLE
TAQELKNAEIALRTQKTPPGLQHENTAPADYFRVLVQQFEVQLQQYRQQIEELENHLATQ
ANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGDAGDVFEA
RRTEAKKWQNAPRVTTGPTPFSTMPNAAAVAMAATLTQQQQPATGPQPSLGVSFGTPFGS
GIGTGLQSSGLGSSNLGGFGTSSGFGCGTTGASTFGFGTTDKPSGSLSAGFGSSSTSGFN
FSNPGITASAGLTFGVSNPASAGFGTGGQLLQLKRPPAGNKRGKR
NT seq 1758 nt   +upstreamnt  +downstreamnt
atggccacggggttctcctttgggtccgggaccctcggctccaccactgtggcccccggc
ggcaccggcacaggcagcggattctccttcggcgcgtccagcacaccttctgtggggctc
aacttcggaactctcggaagctctgcgacaccagcatctacatctacttctgccagtggt
tttggaacaggactctttggatctaagcctggcactggattcactctaggaggaacaagt
gcaggaacaacagctactacatctgcatctacaacaggctttagtttaggattcagtaaa
cctgcagcatctgccacaccatttgccctgcccgtcacttctaccacagctagtggtctt
actctctcgtctgctctgacatcagctccagcagcatccacaggatttacgttgaataac
ttgggagcaacaccagccacaactacagcagcatcaacaggactttccttagggggggcc
ttagctggtttgggaggttcacttttccagagtggaaacacagcaacatcaggtctcgga
cagaatgctttaagcttgtctctggggactgcaacacctacttcagcagccagcagtgaa
ggccttggtggtatagattttagtacctcatcagataaaaagagtgataaaacgggaaca
aggccagaggatagcaaagccctgaaagatgaaaaccttcctcctgtcatctgtcaggat
gttgagaatctccagaaatttgtcaaggaacaaaaacaagtccaagaagaaattagtcga
atgtcttccaaagcaatgcttaaagtccaggaggacatcaaggccctgaagcagctcctg
tcattggctgctagtgggttgcagaggaacacactcaatattgacaaactgaagttagaa
actgctcaggagttaaagaatgcggaaatagctttaagaacccagaaaacaccacctgga
ctccaacatgaaaatacagctcctgctgactacttcagagtcttggttcagcaatttgag
gtacagcttcagcagtacaggcagcagattgaagaactagaaaaccatcttgccactcaa
gcaaacaattcacatataactccgcaagacttatcaatggctatgcagaaaatttatcaa
acatttgtagctttagctgcacaacttcagtccattcatgaaaatgtcaaggtgcttaaa
gaacagtatctcagctacagaaaaatgtttttgggtgatgctggggatgtgtttgaagcc
aggagaacagaagccaagaagtggcagaatgcacccagagttactactggacccacgcct
ttcagcaccatgccaaacgcagcagccgttgccatggctgcaacacttacacagcagcaa
cagcctgctacagggccacagccgtctctgggagttagttttggaacgccattcggctca
ggtattggcactggcttgcaatcaagtggcttaggttcttcaaaccttggaggatttgga
actagctctggtttcggatgcggtaccacaggggcctccacatttggatttggaacaaca
gataaaccctcaggaagtcttagtgcaggctttggcagctcaagtacgtctgggtttaac
ttcagcaatcctggcatcacggcatcagctggtttgacatttggggtgtccaatcctgcg
tctgcggggtttggaacaggaggacaactccttcagttgaagagacctcccgctggaaac
aaaagaggaaagagatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (12)   
   RefSeq(nuc) (4)   
   GenBank (4)   
   EMBL (4)   
3D Structure (2)   
   PDB (2)   
Protein domain (5)   
   Pfam (5)   
All databases (37)   

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