KEGG   Rattus norvegicus (rat): 245924
Entry
245924            CDS       T01003                                 
Symbol
Scaf4
Name
(RefSeq) SR-related and CTD-associated factor 4
  KO
K13167  SR-related and CTD-associated factor 4
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    245924 (Scaf4)
   03041 Spliceosome [BR:rno03041]
    245924 (Scaf4)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     245924 (Scaf4)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   SR proteins
    245924 (Scaf4)
SSDB
Motif
Pfam: CID RRM_1 RRM_occluded
Other DBs
NCBI-GeneID: 245924
NCBI-ProteinID: NP_001032424
RGD: 727896
Ensembl: ENSRNOG00000002104
UniProt: Q6TUE4
Position
11:complement(42951254..43007293)
AA seq 1200 aa
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSENITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSNAAPGAENVTNNEGSPPPPVKVSSELPQAPTNSMPAVPQLP
SSDAFAAVDQLFQTTQGQQLQQILQTFQQPPKPQSPALDSAVMAQVQAITAQLKTAPTQP
PEQKTAFDKKLLDRFDYDDEPEAVEDSKKEDAVAVATTALATAAPPVPAAATPAVAPAVP
ASSATSPPPPQAPFGYPGDGMQQPAYTQHQNVDQFQPRMMALQQDSMQHQVPLPPNGQMP
GFGLLSAPPPFPPMPQPGMPQPGMPQPGMPQPGLSQPGLPQPGMPQPGMPQPGMPQPGMP
QPGLAQPGLAQPGMPQPGMPQPGMPQPGMPQPGMPPTPPVQPTFQPTFQPQNEPHSQKPH
QQEMEVEQPCVTEVKRHVPESRKSRSRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSP
RSRSQERRDREKERERRQKGLPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPI
ESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADFKQYWD
VELGVTYIPWDKVKAEELESFCEGGMLDSDTLNPDWKGIPKKPENEVAQNGGAEASHTEP
VSPIPKPVPVPVPALPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPG
VPPPPPPPPPFWGPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNLVSGARGN
AESADSAKMYGSAGPPAAPTSLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGGRPG
LIPLQRPPGMPPPHLQRFPMMPPRPMPPHMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPF
VRPGGMPGLGGPGPGPGGSEDRDGRQQQPQQQQQQQQQQQQQQQQQQQQPPPQQSQTQQQ
PAPSQQPAPAQQQPQQFRNDNRQQFNSGRDQERFGRRSFGSRVENDRERYGSRSDERDNS
NRERREWGRRSPERDRHRDLEERSRRSSGHRDRDRDSRDRESRREKEESRGKEKHEVADR
AGGNKAVEAPLSQVGNTDTVSELNKGEAMATVVKPEESPAEATSSVEPEKDSGSAAEAPR
NT seq 3603 nt   +upstreamnt  +downstreamnt
atggacgccgtcaacgccttcaaccaggagctcttctcacttatggatatgaaaccaccc
atctctagagccaagatgattcttattactaaagctgctattaaagctattaagctttat
aagcatgttgttcaaatagtagaaaagttcatcaaaaagtgtaagccagagtacaaggtt
ccaggcctgtatgtcattgactccatcgtgagacagtctcggcaccagtttggaactgat
aaagatgtttttgggccaagattctctgagaatataactgctacattccagtatttatat
ctttgtccatctgaagataagagtaaaatagttcgtgtgctaaatctttggcaaaaaaac
ggagtgttcaaaattgaaatcattcagccgcttttggacatggcagcaggaaccagcaat
gctgctccaggagcagaaaatgtcaccaacaatgaaggctcacctccacccccagtaaaa
gtctcttctgaacttccacaagctcccacaaactccatgcctgctgtcccacagctgccc
agctccgatgcctttgctgccgtggatcaactgtttcagacgactcaaggccagcagctt
cagcagatccttcagacttttcaacaacctccaaaaccacagtctcccgcccttgacagt
gctgtgatggctcaggttcaggctatcacagctcagttaaagacagctcctacacaacca
cctgagcaaaaaactgcatttgacaagaagctgcttgacagatttgattatgatgatgag
ccagaagctgtggaagactcgaagaaagaggatgctgtcgccgttgccaccacagccctt
gccacggctgcacctcctgtgcccgctgcagccacacctgctgttgctcctgctgtgcct
gcgtcctctgctacctctccccctcctccacaggcgccatttgggtaccctggagacggc
atgcagcagccagcgtacacacagcatcaaaatgtggaccagtttcaacctcgaatgatg
gcactgcagcaggatagcatgcagcatcaggtcccacttcctcctaacggacagatgcca
ggatttgggcttctctctgcaccacctccatttcctcccatgcctcagcccgggatgccc
cagcccgggatgcctcagcccgggatgcctcagcctgggttgtctcagcctgggttgccc
cagcccgggatgcctcagcccgggatgcctcagcccgggatgccccagcccgggatgccc
cagcctgggttggctcagcctgggttggcccagcccgggatgcctcagcccgggatgccc
cagcccgggatgccccagcccgggatgccccagcctggaatgcctccaactccaccagta
cagccaactttccaacctacttttcaaccacaaaatgaaccccattcacaaaagccacat
cagcaggaaatggaagtagagcagccttgtgtcacagaggttaagcggcatgtgcctgag
agcagaaagtcgagatccaggtcaccaaaaagaagaagatctaggtctggctctaggtct
cggagatcccgccaccgtcggtctcggtcccggtccagggataggcgccggcactcgcct
cgctctcgctctcaagaaagacgggatcgagaaaaagagagggagcggcggcagaaaggc
ctccctcagatcaagtcagagactgcaagtgtttgcagcaccacactgtgggtgggacag
ctggacaaaaggactactcagcaggatgttgccagtctcttagaagagtttggtccaatt
gaatcaattaacatgattcctcccaggggctgcgcctacatagttatggttcataggcaa
gacgcataccgtgccctgcagaaactgagccgaggaaactataaagtgaaccagaaatcc
ataaagattgcctgggccttaaacaaaggaataaaggcggattttaaacagtattgggat
gttgaacttggtgttacttacattccatgggacaaagtcaaagctgaggagctggagagt
ttctgtgaaggaggcatgttggacagtgacacacttaacccagattggaaaggcatcccc
aaaaagcctgaaaatgaagttgcccaaaatggaggtgcagaagcctcccacacagagcca
gtgtcccccatccctaagcctgtgcccgtgcctgtgcctgcccttcctgttcctgcacct
ataacagtaccacctccacaggtcccaccgcatcagccgggccctcctgtcgttggtgct
ctccaaccgcctgctttcactcctcccttagggatcccccctccaggctttggccctggt
gttcctcctcctcctcctcctccaccaccattttggggcccaggattcaacccaatgcat
ttaccaccaggttttcttcctcctggacccccacctcctataactccaccagtatccatt
cctccacctcacactccaccaataagcatcccaaacttggtgtctggggctagaggaaat
gccgagtctgctgacagtgcgaaaatgtatggttctgctgggccacctgctgcacccacg
agtctgcccacccctcctgtaacccagcctgtttcactgcttggcactcaaggagttgca
cctggtcctgtgattgggctccaggcaccctctaccggtcttctcggtggcagacccggc
ctgatcccactccagcgccccccaggaatgcctccaccacacttgcaacggttccctatg
atgccacctcggcccatgccacctcacatgatgcacaggggtccgccaccaggaccaggg
ggctttgctatgcctccacctcatggaatgaaagggcctttcccaccacatggccccttt
gttaggcctggtggaatgccagggcttgggggcccaggcccaggcccaggaggatcagaa
gacagagatggaaggcaacagcaaccgcagcagcagcagcagcagcagcagcagcagcag
cagcagcagcagcagcagcagcagcaaccaccaccacagcagtcacagacacagcagcag
ccagcgccatcccagcagccagcgccagctcagcagcagccacagcagtttagaaatgat
aacaggcagcagttcaactcaggtagagaccaagaaaggtttggaagaagatcttttgga
agtagggtggaaaatgaccgggagcggtatgggagccgtagtgatgagagagataatagc
aaccgtgaaaggagagagtggggaaggaggagccctgagcgggacagacacagagacttg
gaagagagaagtagacgctctagtgggcatcgggacagagacagggattctagagataga
gagtcccgtagagagaaggaagaaagtagaggaaaggagaagcacgaggtggcagacagg
gcaggtggtaacaaagctgtcgaagctccccttagccaagtgggaaacacagacactgtt
tcagaacttaataagggggaggccatggccacagtggtaaaacctgaagagtcacctgct
gaggctacctcatccgttgaacctgagaaggattctggctcagcagcagaggctcctcgc
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (20)   

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