KEGG   Rattus norvegicus (rat): 245926
Entry
245926            CDS       T01003                                 
Symbol
Scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8
  KO
K13191  RNA-binding protein 16
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    245926 (Scaf8)
   03041 Spliceosome [BR:rno03041]
    245926 (Scaf8)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     245926 (Scaf8)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    245926 (Scaf8)
SSDB
Motif
Pfam: CID RRM_1 DUF3525
Other DBs
NCBI-GeneID: 245926
NCBI-ProteinID: NP_620794
RGD: 708362
Ensembl: ENSRNOG00000016919
UniProt: Q63623
Position
1:46132972..46321162
AA seq 1268 aa
MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQVGQEKDVCAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLASTTVAMSNTPGTPVTPVTPANVVQGLPDPWVS
QITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQL
TAAAAAANTLTPLDQGVSFNKKLMDRFDFGEDSEHSEESKKEIPTPQLSHVSESVNNSIF
HQIAEQLQQQNLEQLRQQLLEQQQPQKVTPQDSQEGAFGSEHSASPSQGSSQQHFLEPEA
NLDDSIDIQQQDMDIDEGQDVVEEEIFEPEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRS
GSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPVRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDSFRALQKLSSGSYKIG
SKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGMIDQETVNAEWE
TVKTSEPVKETVQTTQSPAAVEKETVVTTQSEVFPPPVTMLQIPVAPTVPAVSLVPPAFP
VSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPAIPPVVPTSLVQPPL
SMTPETVKDVGFGSLVLPGGSVAGNLAPSTLPAGNVFNPPSKAEPEEKVPHLTEHQIPSG
ENTRPVIPSDIPSSAPMLAQPPGASNTSGILCVQRPNVSSNSEILGVRPANVSNSAAIMG
AQPPNMLNNSGILGIQPPNVSSGSGLLGVLPPNLPNNSGLVGLQPPNVTNPAGLLGTQPP
IGPQNLPPLTIPAQRMPALPMLDIRPGLIAQAPGPRFPLLQPGIPPQRGIPPPSVLDAAL
HPPPRGPFPPGDLFSQPERPFLAPGRPNIDSVPNPDKRIPLGNDNIQQEGDRDYRFPPIE
TREGINRPPPVDVRDVVGRPIDPREGPGRPPLDGRDHFGRPPVDMRETLVRPGLDHLGRR
DHFGFPPEKPWGPRDFDEREHRVLPVFGGPKGLHEERGRFRAGNYRFDPRSGPWNRGFGQ
EVHRDFDDRRRPWERQRDRDDRDFDFCREINGNRLGRDRIQNTWVPPPHARVFDYFEGAT
SQRKGENVPQVNGGNTERHAPPPPLPVQKDPELYEKLASSGDADKEESGTAAGVESEAVV
ESTETEGT
NT seq 3807 nt   +upstreamnt  +downstreamnt
atggaggccgtgaagaccttcaacagcgagttgtattcgctgaatgactataagccaccc
atttctaaagcaaaaatgacccagattacaaaggcagccatcaaagctattaagttctat
aaacatgtggtacagagcgttgagaaattcattcagaaatgtaaaccagaatacaaggta
cccggactgtatgttattgactccattgtgcgacaatcccggcatcaggttggtcaagaa
aaggatgtgtgtgcacccagatttagtaataacatcattagcactttccagaatttatat
cggtgcccgggggatgacaagagtaaaatagtgagagtattaaacttatggcagaagaat
aatgtttttaagagcgagattatccagcctctcctggatatggcggcagggattcctccc
ccagttgtcaccccggttttggccagcaccactgtagccatgagcaacactccaggaaca
cctgtgacacctgttactccagccaatgtggttcaaggcctacctgatccatgggtatcg
cagataacaaacacagacacactggcagctgttgcccagatcctacaaagtcctcaaggt
caacagcttcagcaactaatacagaccttacagatacaacagcagaagccccagccctct
atccttcaggctttggatgctggccttgtggttcagttgcaggcactcactgcacagctt
acagctgcagctgctgcagccaacacacttactcccttggaccagggagtctctttcaac
aagaagttgatggatagatttgattttggggaagattctgagcatagtgaagaatccaaa
aaggaaattcctactcctcaactctctcacgtttctgagtctgtgaacaactccatcttc
catcagatagcagaacagctgcagcagcagaacctggagcagttgcggcagcagctcctg
gagcagcagcagcctcagaaggtaactcctcaggacagccaggagggagcatttggctct
gagcactcagcttcaccctcacaagggagtagccaacagcattttctggaacctgaagca
aatttagatgattccatagacattcagcaacaggatatggatattgatgaagggcaagat
gttgttgaagaggagatctttgaaccagaagctaagaaagtagctgttcgctcaagatca
agaactcattcacgatctcgatcaaggtcaccaagaaaacggaggtccaggtcacgctct
gggtcccgaaagcgaaagcataggaagaggtctcgctcccgctccagagagagaaagaga
aaatcctcacgttcctattcaagtgaacgcagagccagggaaagggagaaagaacgccaa
aaaaagggcttgcctcctgtcagatcgaaaacgctaagtgtatgcagcactactctctgg
gttggccaagtggacaagaaggctacacagcaagatttaaccaacctttttgaggagttt
gggcaaatcgaatccattaatatgattccacccaggggctgtgcatatgtctgtatggtt
catcgacaagattcatttcgggctctccagaaactgagttcaggatcctataaaattggt
tccaaggtcattaagattgcctgggctttgaacaaaggtgtaaagacagaatacaaacag
ttctgggacgtggatcttggagtcacatatataccctgggaaaaagttaaagtagatgac
ttggatggctttgcagagggaggcatgattgatcaggaaactgtaaatgctgaatgggaa
actgtgaaaacctcagaacccgttaaagagactgtccagacgacacagagtccagctgca
gttgagaaggagacagtggtcacaacgcagtcagaggttttccctcctcctgtcaccatg
ctgcagattcctgtagcaccaaccgttcctgcagttagcttagttccaccagcgtttcct
gtgtcgatgcctgtcccccctcctggattcagccccatccctccacctccttttctacga
gcaagttttaacccttcacaaccacctcctggttttatgccacctccagttcccccacct
gtggtacctccccctgcaatcccacccgtagtaccaacatctttagtgcaaccaccattg
tctatgaccccagaaactgtgaaagatgttggatttggcagccttgttttaccaggtggt
tctgttgctggcaatcttgctccttcaactctaccagctggaaatgtttttaatcctccc
agtaaagcagagcctgaagaaaaagtacctcaccttacagaacaccagattccttctggt
gagaataccagaccagtgattccaagtgatattccaagcagtgctccaatgttagcacag
ccgcctggggcctcaaacacctctgggatcctgtgcgtgcagagaccaaacgtatcaagc
aattctgaaattctgggggttcgtccagccaatgtttccaacagtgctgcgattatggga
gcccagccaccaaatatgctcaataactctggaattttgggcatacagccaccaaatgtg
tccagtggctctggacttcttggggtactgcctccaaacttgcctaacaactctggactt
gtaggactacagccaccaaatgttacaaatcctgctggacttttgggaacacagccacca
attggacctcaaaacttaccccctttaaccatccctgctcaaaggatgcctgcgttgcca
atgttagacattcgtccgggactgatagcacaggctcctgggccaagattccctttacta
cagcctggaattccaccacaacggggtatccctcccccatcggtacttgacgcagctctt
catccaccaccccgtggaccttttcctccaggggatctttttagtcagccagaaagacct
tttctggctcctggaagaccaaatatagacagtgttcctaacccagataaaagaatacca
cttgggaatgacaatatccagcaggaaggggatagagattaccgctttcctcctatagaa
accagggagggcattaatagacctcctccagtggatgttagggatgtggttggacgacct
atagatcccagagaaggccctggtaggcctccgttagatggtagggatcattttggaaga
cctccagtggacatgagagagactcttgtgaggccaggtctagaccaccttggccgaaga
gaccactttggctttcccccagaaaagccttgggggcctagagatttcgatgagagagag
caccgagttctgcctgtctttggtggtccaaagggcttacatgaagaaagaggcagattt
cgggctggaaattatcgatttgatcctagaagtggtccttggaacagaggatttggacaa
gaagttcacagagattttgatgaccgcagaagaccctgggagaggcagagggatagggat
gacagagattttgatttctgcagagaaattaatgggaatcgtcttggacgagatagaatt
caaaacacttgggttccccctcctcatgctcgggtttttgattatttcgaaggggccact
tctcaacggaaaggtgagaatgtgcctcaagttaatggtggaaatacagagagacatgct
ccgccaccgcctttgccagtgcagaaggaccctgaactctatgagaagctggcgtcttca
ggagacgcagacaaggaggagagcggcacagctgctggtgtagagagtgaagcggtggta
gaaagcacagagactgaggggacataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (16)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (14)   
DNA sequence (24)   
   RefSeq(nuc) (20)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (53)   

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