KEGG   Rattus norvegicus (rat): 245957
Entry
245957            CDS       T01003                                 
Symbol
Ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform 1
  KO
K12811  ATP-dependent RNA helicase DDX46/PRP5 [EC:3.6.4.13]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    245957 (Ddx46)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    245957 (Ddx46)
Spliceosome [BR:rno03041]
 Complex A
  U2 snRNP components
   U2 related factors
    245957 (Ddx46)
 Complex B
    245957 (Ddx46)
SSDB
Motif
Pfam: DEAD Helicase_C CdAMP_rec
Other DBs
NCBI-GeneID: 245957
NCBI-ProteinID: NP_620798
RGD: 708480
Ensembl: ENSRNOG00000021637
UniProt: Q62780
Position
17:complement(8947237..8993705)
AA seq 1032 aa
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS
RSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGSKSKKAENRSRS
KEKAEGGDSSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAME
NIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEDEELDPLDAYMEEVKEEVK
KFNMRSVKGGAGNEKKSGPTVTKVVTVVTTKKAVVDADKKKGELMENDQDAMEYSSEEEE
VDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGI
TVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGS
GKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVY
GGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFE
PQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVI
EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS
IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY
TFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKF
DETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSAPA
PTAGNAEKLEIAKRLALRINAQKNLGIESQVDVMQQATNAILRGGPLLAPTVSAKTIAEQ
LAEKINAKLNYVPLEKQEEERQEGGQSESFKRYEEELEINDFPQTARWKVTSKEALQRIS
EYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNS
YQPTNKGRYKVL
NT seq 3099 nt   +upstreamnt  +downstreamnt
atgggcagggagtctcgccattaccgaaaacggtcagcatctcgaggtcgctctggaagt
cggtctaggagtcgctcaccctctgacaaaagaagcaaacgtggagatgacaggcgttcc
aggagtagagacagagacagaaggagagagaggtctcggagcagggacaaaaggagatct
cggtcacgggacaggaaacgcctgagacgttccagaagtagagagcgtgacagaagccga
gagcgaagaagatctcgaagccgggatagaaggcgctcaaggagtcggagccggggcagg
cggtcccggtcttccagtcctggcagcaaaagcaagaaagctgagaacaggtctaggtcc
aaagagaaagcagaaggtggggacagctccaaggagaagaagaaagacaaggacgacaag
gaggacgagaaagagaaggatgctgggaattttgaccagaataagctggaagaagaaatg
agaaaacgaaaagaaagggttgaaaaatggcgagaagagcagcgtaaaaaggcgatggag
aacataggggagctgaagaaggagatcgaggagatgaagcaggggaagaagtggagcctg
gaagatgacgacgatgatgaagatgaccctgccgaggctgagaaggaagggaatgaaatg
gaggacgaggagctggacccattagatgcctacatggaggaagtgaaagaagaggtaaaa
aagtttaacatgaggagcgtgaaaggcggcgcaggaaatgagaagaagtccggaccgact
gtcacgaaagtggttactgtggtaacaaccaagaaagcagtagtagatgccgacaagaag
aagggagagctgatggagaatgaccaggacgccatggagtactcctcggaggaggaagag
gttgaccttcagacggccctcacaggctaccagacaaaacagagaaagcttctagagcca
gtggatcatgggaaaattgagtatgagccattcagaaaaaacttttacgttgaagttcca
gaattagcgaaaatgtctcaagaagaggtgaatgtgtttcggttggaaatggagggcatt
acagttaaaggaaaaggttgccccaagccaattaaatcatgggtccagtgtggaatttcc
atgaagatactgaattccctcaaaaagcatggctatgaaaagcccacaccaatccaaact
caagcaattcctgctataatgtctggacgagatttgattggcattgccaagacaggaagt
ggaaaaaccattgcttttcttttgcccatgtttagacacatcatggatcagaggtcattg
gaagaaggagagggaccaatcgctgtcatcatgactccaactcgagaactggctttacaa
atcactaaagaatgtaagaagttttcgaagaccttgggactgagagtggtctgtgtgtat
ggagggacaggaatcagcgagcagattgctgagctgaagagaggcgctgagatcattgtt
tgcacacctggccggatgatcgacatgctggcagctaacagtggtcgggtcacaaatctt
cgaagagtgacatatgttgttttagatgaagcagacagaatgtttgacatgggttttgaa
ccacaggtcatgcgcattgtggacaatgtccgtcctgaccgacagacagttatgttctca
gctactttcccaagagctatggaagcgttggcccgcaggatcttgagcaagcccattgaa
gttcaggttggaggccggagtgtggtttgctcagatgtggaacaacaagtgattgtgatt
gaagaagagaagaaattcttgaaattgctggagcttttaggccattatcaggagtcagga
tctgtcattatatttgtggataagcaggaacacgctgatggtcttctgaaggacttgatg
agagcttcctacccttgcatgtctcttcacggaggtattgatcagtatgacagggacagt
atcataaatgactttaagaatggaacctgcaaacttctcgtagccacgtctgttgccgcc
cgtggtctagatgtgaaacatctcattcttgtagtaaattacagctgccccaatcattac
gaagattacgtgcacagggctgggcggactggaagagcaggcaacaagggttatgcctac
accttcatcacagaagaccaagctcgatatgctggggacatcattaaagctcttgaactg
tcggggacggcggtgcctcctgacctagagaaactatggagtgacttcaaagatcagcag
aaagctgaaggaaaaataattaaaaagagcagcggcttctctggcaaggggttcaagttt
gatgagacagagcaggctttagccaatgagaggaaaaagctacaaaaagctgcccttggc
ctgcaggattctgatgacgaggacgccgcagttgatattgacgagcagattgaaagcatg
tttaattccaagaagagagtgaaagacatggctgctcccggcacatccagtgcgcctgct
ccgactgcgggcaatgctgagaagctagagattgccaagaggttggcgcttagaatcaac
gctcagaagaacctgggcatcgagtctcaggtagatgtgatgcagcaggccacaaatgcc
atcctcagaggtggccctcttctggctcccaccgtgtctgcaaaaaccatcgcagagcag
cttgccgagaagatcaatgccaagctcaattacgtgcctttggagaaacaggaagaagag
agacaggagggtgggcagagcgaatctttcaagagatacgaggaagaattagaaattaat
gacttcccacagacggcgaggtggaaagttacctctaaggaagccttgcagaggatcagt
gagtactcggaagccgccatcacaatcagagggacctacttcccgcctggcaaagagccc
aaggaaggagagcggaagatctacttggcgattgaaagtgccaacgagctggctgtgcag
aaagcaaaggcagagatcaccaggctcataaaagaggagctgatccgactgcaaaattca
taccaacccaccaacaaaggacgatacaaagtattataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (13)   
   RefSeq(nuc) (5)   
   GenBank (4)   
   EMBL (4)   
Protein domain (3)   
   Pfam (3)   
All databases (33)   

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