KEGG   Rattus norvegicus (rat): 245976
Entry
245976            CDS       T01003                                 
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    245976 (Xab2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    245976 (Xab2)
   03041 Spliceosome [BR:rno03041]
    245976 (Xab2)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     245976 (Xab2)
Spliceosome [BR:rno03041]
 Complex B
  Other components
   Prp19-related factors
    245976 (Xab2)
 Complex C
    245976 (Xab2)
SSDB
Motif
Pfam: TPR_14 TPR_2 TPR_12 TPR_8 TPR_19 Suf TPR_15 TPR_1 TPR_7 TPR_21 TPR_16
Other DBs
NCBI-GeneID: 245976
NCBI-ProteinID: NP_620809
RGD: 621217
Ensembl: ENSRNOG00000000988
UniProt: Q99PK0 A6KQ13
Position
12:complement(6465569..6477616)
AA seq 855 aa
MVVMARVPRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq 2568 nt   +upstreamnt  +downstreamnt
atggtggtgatggcgcgagttccgcgtcccgagcggccggatcttgtttttgaggaagaa
gaccttccctatgaggaagaaatcatgaggaaccagttctctgtcaaatgctggctccgc
tacatcgagttcaaacagggggcccccaaaccccgactcaatcagttgtacgagcgggca
ctgaaactgcttccctgcagctacaaactctggtaccgctatctgaaggcacgccgggcg
caggtgaaacatcgctgtgtgactgaccctgcctatgaagatgtcaacaactgccatgag
agggccttcgtgttcatgcacaagatgccacgtctatggttagactattgccagttcctc
atggaccagggccgagtcacacacacccgccgcacctttgaccgcgccctcagggcactg
cccatcacccagcactctcgcatctggcccctgtatctgcgtttcctgcgctctcacccg
ctgcctgagactgctgtgcgaggctaccgtcgcttcctcaagctgagtcctgagagtgct
gaggagtacatcgagtacctcaagtccagtgaccggctagacgaggctgcacagcgcctg
gccacagtggtgaatgacgagcgctttgtgtccaaggctggtaaatccaactaccagctg
tggcacgagctgtgtgaccttatctcccagaatccagacaaggtacagtctctcaatgtg
gatgccataatccgtggtgggctcacccgcttcaccgaccagctgggcaagctatggtgc
tccctggcagactactatatccgcagtggccactttgaaaaggctcgggatgtgtatgag
gaagccatccgcactgtgatgaccgtgcgggacttcacccaggtgtttgacagctatgcc
caattcgaggagagcatgattgcagcgaagatggagactgcctctgaactggggcgtgag
gaggaggatgatgtggatctggagctgcgcctggcccgctttgagcagctcataagccgg
cggcccctgcttctcaacagtgtccttctgcgccagaacccacaccacgtccacgagtgg
cacaagcgtgtagccctgcatcagggccgccctcgggagattatcaacacctacacagag
gccgtgcagacagtagaccccttcaaagccacgggcaagccccacaccctgtgggttgca
tttgccaagttttatgaagacaacggacagctggacgatgctcgtgtcatcctagagaag
gccaccaaggtgaacttcaagcaggtggacgacctggcaagtgtgtggtgccagtgcggg
gagctggagctccggcatgagaattacgatgaggcattaaagctgcttcggaaagcgaca
gctttgcctgcccgccgggctgagtacttcgatggttcagagcctgtgcagaaccgtgta
tacaagtcgctgaaggtgtggtccatgcttgccgacctggaggaaagcttgggcactttc
cagtcaaccaaggcagtgtatgaccgaatcctggacctgcgcatagccacaccacagatt
gtcattaactatgccatgtttctggaggagcacaagtactttgaggagagcttcaaggca
tatgagcgtggcatctcgctgttcaagtggcccaatgtttccgacatctggagcacctac
ctgaccaaattcatctcccgctacgggggccgcaagctggagcgtgcacgggatctcttt
gagcaggcactagatggctgcccaccaaaatatgccaagactttatacctgctttacgca
cagctggaggaggagtggggccttgcccgccatgccatggctgtgtatgaccgtgctacc
agggcagtggagccagcccagcagtacgacatgtttaacatctacatcaagcgggctgct
gagatctacggtgtcacccacactcgcggcatctaccagaaggccattgaggtgctgtct
gatgagcatgcccgtgagatgtgcctgaggtttgcagacatggagtgcaagctcggcgag
atcgaccgtgcccgggctatctacagcttctgctcccagatctgtgatccccggacaact
ggggcattctggcaaacgtggaaggactttgaggtccggcacggcaacgaggacaccatc
agggagatgctgaggatacggcggagtgtgcaggccacgtacaacactcaggtcaacttc
atggcttcgcagatgctcaaggtgtcgggcagtgccacgggcacggtgtctgacctggct
cccgggcagagcggcatggatgacatgaagttgctggaacagagagcagaacagctagcg
gccgaggcagagcgggaccagccccccagggcccagagcaagatcttctttgtgaggagt
gatgcatccagggaggaattggcagagctggctcagcaggccaaccctgaggaaatccag
ctgggcgaggacgaggacgaggacgagatggacctggaacccaatgaagtccgactggaa
cagcagagtgtgccagctgctgtgttcgggagcctaaaggaagactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (11)   
   Pfam (11)   
All databases (33)   

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