KEGG   Rattus norvegicus (rat): 246216
Entry
246216            CDS       T01003                                 
Symbol
Prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
rno04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    246216 (Prpf19)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    246216 (Prpf19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    246216 (Prpf19)
   04121 Ubiquitin system [BR:rno04121]
    246216 (Prpf19)
   03400 DNA repair and recombination proteins [BR:rno03400]
    246216 (Prpf19)
Enzymes [BR:rno01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     246216 (Prpf19)
Spliceosome [BR:rno03041]
 Complex B
  Other components
   Prp19 complex
    246216 (Prpf19)
 Complex C
   Prp19-CDC5 complex
    246216 (Prpf19)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  U-box type E3
   246216 (Prpf19)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    246216 (Prpf19)
SSDB
Motif
Pfam: WD40 Prp19 ANAPC4_WD40 NBCH_WD40 U-box eIF2A PROPPIN Cytochrom_D1 RMC1_N zf-Nse Nup160 DUF1830 ATG16 Cep57_MT_bd
Other DBs
NCBI-GeneID: 246216
NCBI-ProteinID: NP_647549
RGD: 708496
Ensembl: ENSRNOG00000020897
UniProt: Q9JMJ4 A6I070
Position
1:216966104..216977549
AA seq 504 aa
MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHP
IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQKLQDKA
TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
GADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQ
VVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHP
DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG
VAFGHHAKFIASTGMDRSLKFYSL
NT seq 1515 nt   +upstreamnt  +downstreamnt
atgtccctgatctgctcgatctccaacgaagtgccagagcacccatgcgtgtcccctgtc
tctaatcatgtgtatgagcggcgactcattgagaagtacattgcagagaatggcacagat
cctatcaacaaccagcctctctcagaggagcagctcatcgacatcaaagttgctcatcca
atccggcccaagcctccctctgccaccagcatcccagccattctgaaagccttgcaggat
gagtgggatgcagtcatgctgcacagcttcactcttcgccagcagctgcagacaacccgc
caggaactgtcccacgctctgtaccagcacgatgctgcctgccgagtcattgcccggctc
accaaggaggtcactgctgctcgagaagctctggctactctgaaaccacaggctggtctt
attgtacctcaggctgtgccaagctcacagcccagtgttgtgggtgcaggagagcccatg
gatttgggtgagcttgtgggaatgacccctgagattatccagaagcttcaagacaaggcc
actgtactaaccacggagcgtaagaagagaggaaaaactgtccctgaggagctggtgaag
cctgaagagctcagcaagtaccggcaggtggcatcccatgtggggctacacagtgctagc
attcctgggattcttgctctggacctgtgtccctcagacaccaacaagattcttactggt
ggggcagataaaaacgttgttgtctttgataagagtactgagcaaatcctggccactctc
aaaggccataccaagaaggtcaccagtgtggtgtttcatccttctcaggaattggtgttt
tctgcgtcccctgatgctactatcaggatttggtccgtcccgaacacttcttgtgtacag
gttgttcgggcccatgagagtgcggtgacaggactcagcctccatgccactggagactat
ctactgagctcctctgatgatcagtactgggcgttctctgacattcagacagggcgtgtg
ctcaccaaggtgacagatgagacttccggctgctctcttacctgtgcacagttccaccct
gatggcctcatctttggaacaggaaccatggactcccagatcaagatctgggacttgaag
gaacgcaccaatgtggcgaacttccctggccactccggccccattaccagcattgccttc
tctgagaatgggtactacctggccacggcagctgatgactcctcagtcaagctctgggac
ttacgcaagttgaagaacttcaagacattgcagctggacaacaactttgaggtgaagtca
ctaatctttgaccagagtggcacctacctggcgcttgggggtacagatgtccagatctac
atctgcaaacagtggacagagattcttcactttacagagcatagtggcctgaccactgga
gtggcctttgggcaccacgccaagttcatcgcttcaaccggcatggacaggagcctcaaa
ttctacagtctgtag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (14)   
   Pfam (14)   
All databases (40)   

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