KEGG   Rattus norvegicus (rat): 24646
Entry
24646             CDS       T01003                                 
Symbol
Abcb1b
Name
(RefSeq) ATP-dependent translocase ABCB1
  KO
K05658  ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno02010  ABC transporters
rno04976  Bile secretion
rno05206  MicroRNAs in cancer
rno05226  Gastric cancer
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    24646 (Abcb1b)
 09150 Organismal Systems
  09154 Digestive system
   04976 Bile secretion
    24646 (Abcb1b)
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    24646 (Abcb1b)
  09162 Cancer: specific types
   05226 Gastric cancer
    24646 (Abcb1b)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:rno02000]
    24646 (Abcb1b)
   04147 Exosome [BR:rno04147]
    24646 (Abcb1b)
   04090 CD molecules [BR:rno04090]
    24646 (Abcb1b)
Enzymes [BR:rno01000]
 7. Translocases
  7.6  Catalysing the translocation of other compounds
   7.6.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.6.2.2  ABC-type xenobiotic transporter
     24646 (Abcb1b)
Transporters [BR:rno02000]
 ABC transporters, eukaryotic type
  ABCB (MDR/TAP) subfamily
   ABCB1, 4, 5 subgroups
    24646 (Abcb1b)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   24646 (Abcb1b)
CD molecules [BR:rno04090]
 Proteins
  24646 (Abcb1b)
SSDB
Motif
Pfam: ABC_membrane ABC_tran SMC_N ABC_ATPase AAA_16 AAA_22 Rad17 RsgA_GTPase Zeta_toxin AAA_5 AAA_29 AAA_28 G-alpha AAA_14 AAA_15 AAA_30 PRK AAA_7 APS_kinase nSTAND1 NTPase_1
Other DBs
NCBI-GeneID: 24646
NCBI-ProteinID: NP_036755
RGD: 3318
Ensembl: ENSRNOG00000066042
UniProt: Q8R427
Position
4:complement(26197706..26280156)
AA seq 1275 aa
MEFEEGLNGTADKNFSKMGKKSKKEKEKKPAVGIFGMFRYADWLDKLCMALGTLAAIIHG
TLLPLLMLVFGYMTDSFTQAETRILPSVTNQSEINSTQTVSDSSLEEDMAMYAYYYTGIG
AGVLIVAYIQVSLWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVNDAGELNTRLTDDVSKI
NDGIGDKLGMFFQSITTFSAGFIIGFISGWKLTLVILAVSPLIGLSSAMWAKVLTSFTNK
ELQAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNKNLEEAKRVGIKKAITANISIGIA
YLLVYASYALAFWYGTSLVLSNEYSIGQVLTVFFSILLGTFSIGHLAPNIEAFANARGAA
YEIFKIIDNEPSIDSFSTKGHKPDSIMGNLEFKNVYFNYPSRSEVKILKGLNLKVKSGQT
VALVGNSGCGKSTTVQLLQRLYDPIEGEVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT
TIAENIRYGRENVTMDEIEKAVKEANAYDFIMKLPHKFNTLVGERGAQLSGGQKQRIAIA
RALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFD
GGVIVEQGNHEELMKEKGIYFKLVMTQTRGNEIEPGNNAYESQSDTGASELTSEKSKSPL
IRRSIRRSIHRRQDQERRLSSKEDVDEDVPMVSFWQILKLNISEWPYLVVGVLCAVINGC
IQPVFAIVFSKIVGVFSRDDDHETKQRNCNLFSLLFLVMGMISFVTYFFQGFTFGKAGEI
LTKRLRYMVFKSMLRQDISWFDDHKNTTGSLTTRLASDASNVKGAMGSRLAVVTQNVANL
GTGIILSLVYGWQLTLLLVVIIPLIVLGGIIEMKLLSGQALKDKKELEISGKIATEAIEN
FRTVVSLTREQKFETMYAQSLQIPYRNALKKAHVFGITFAFTQAMIYFSYAACFRFGAYL
VARELMTFENVMLVFSAVVFGAMAAGNTSSFAPDYAKAKVSASHIIRIIEKIPEIDSYST
EGLKPNWLEGNVKFNGVMFNYPTRPNIPVLQGLSFEVKKGQTLALVGSSGCGKSTVVQLL
ERFYNPMAGTVFLDGKEIKQLNVQWLRAHLGIVSQEPILFDCSITENIAYGDNSRVVSHE
EIVRAAREANIHQFIDSLPEKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEAT
SALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGQVKEHGTHQQLLAQ
KGIYFSMVQAGAKRS
NT seq 3828 nt   +upstreamnt  +downstreamnt
atggagtttgaagagggccttaacggaacagcagacaagaacttctcaaagatgggcaaa
aagagtaaaaaggagaaggagaagaaacctgctgttggcatattcgggatgtttcgctat
gcagattggcttgacaagctgtgcatggctctgggaactctcgctgctatcatccacgga
accctgcttcccctcctgatgctggtgttcggatacatgacagatagttttacccaagca
gagacccgcattctgccgagcgttactaatcaaagtgaaatcaacagtacacagaccgtc
agcgacagcagtctggaggaggacatggccatgtacgcctactattacacgggcattggt
gccggtgtgctcatcgttgcctacatccaggtttcactttggtgcctggcagctgggaga
caaatacacaagattaggcagaagtttttccatgccatcatgaatcaggagataggctgg
tttgacgtgaatgacgctggggagctcaacacccggctcacagatgacgtctccaaaatt
aatgacggaattggtgacaaacttggaatgttctttcagtccataacgacattttcagcc
ggttttataataggatttataagtggttggaagctaacccttgtaattttggccgtcagc
cctcttattgggttgtcatctgccatgtgggcaaaggtactgacttcatttactaataag
gaactccaggcttatgcgaaagctggagcagttgccgaagaagtcttagcagccatcaga
actgtgattgcatttggaggacaaaagaaggaacttgaaaggtacaataaaaatttagaa
gaagctaaaagagttggcataaagaaagccatcacggccaacatttccataggtattgcc
tacctgttggtctatgcgtcttatgcactggcattctggtatgggacctccttggtcctc
tcaaatgaatattctattggacaagtgcttaccgtcttcttctctattttattggggact
ttcagtattggacatttagccccaaacatagaagcctttgcaaatgcaagaggggcagcc
tatgaaatcttcaagataattgataatgagccaagcattgacagcttctcaaccaaggga
cacaaaccagacagtataatgggaaatttggaatttaaaaatgtttacttcaactaccca
tcacgaagtgaagttaagatcttgaagggcctcaacctgaaggtgaagagcgggcagacg
gtagccctggttggcaacagtggctgtgggaaaagcacaactgtccagctgctgcagagg
ctctacgaccccatagagggcgaggtcagtatcgacggacaggacatcaggaccatcaat
gtgaggtatctgcgggaaatcattggggtggtgagtcaggaacccgtgctgtttgccacc
acgattgccgaaaacattcgctatggccgagaaaacgtcaccatggatgagatagagaaa
gctgtcaaggaagccaatgcctatgacttcatcatgaaactgccccacaaatttaacacc
ctggttggtgagagaggggcgcagctgagtgggggacagaaacagaggatcgccattgcc
cgggccctggtccgcaaccccaagatccttttgttggatgaggccacgtcagccttggac
acagaaagcgaagccgtggttcaggccgctctggataaggctagagaaggccggaccacc
attgtgatagctcaccgcttgtctacagtgcgcaatgctgacgtcattgctggttttgat
ggtggtgtcattgtggagcaaggaaatcatgaagagctcatgaaagagaagggcatttac
ttcaaacttgtcatgacacagactagaggaaatgaaattgaaccaggaaataatgcttat
gaatcccaaagtgacactggtgcctctgagttgacttcagaaaaatcaaaatctccttta
ataaggagatcaattcgcagaagtatccacagaagacaagaccaggagagaagacttagt
tcgaaagaggatgtggatgaagatgtgcctatggtttccttttggcagatcctaaagcta
aatattagtgaatggccctatttagttgtgggtgtactttgtgctgttataaatgggtgc
atacaaccagtgtttgccatagtgttttcaaagattgtaggggttttttcaagagacgac
gaccatgaaaccaaacaacggaattgtaacttgttttcccttctctttctggtcatggga
atgatttcttttgttacgtacttctttcaaggcttcacatttggcaaagctggagagatc
ctcaccaagcgactccgatacatggtcttcaaatccatgctgcgacaggatataagctgg
tttgatgaccataaaaacaccactggctcgctgactaccaggctcgctagtgacgcttct
aatgttaaaggggctatgggctccaggcttgctgtagttacccagaatgtagcaaacctt
ggcacaggaattatcttatccttagtctatggctggcagcttacacttttacttgtagta
attataccactcattgtcttgggtggaattattgaaatgaaactgttgtctggtcaagcc
ttgaaggacaagaaagagctagagatctctgggaagatcgctacagaagcaattgaaaac
ttccgcactgttgtctctttgactcgggagcagaagtttgaaactatgtatgcccagagc
ttgcagataccatacagaaatgctttgaagaaagcacacgtctttgggatcaccttcgcc
ttcacccaggccatgatttatttctcctatgctgcttgtttccggttcggtgcctacttg
gtggcacgagaactcatgacatttgaaaatgttatgttggtattttctgctgttgtcttt
ggtgccatggcagcagggaataccagttcattcgctcctgactacgcgaaggccaaagtc
tcagcatcccacatcatcaggatcattgagaaaatccccgagattgacagctacagcacg
gagggcttgaagcctaattggttagaaggaaatgtgaaatttaatggagtcatgttcaac
tatcccacccgacccaacatcccagtgcttcagggactgagcttcgaggtgaagaagggg
cagacgctcgccctggtgggcagcagtggctgcgggaagagcacggtggtccagctgctc
gagcgcttctacaaccccatggctggaacagtgtttctagatggcaaagaaataaaacaa
ctcaacgtccagtggctccgcgcccacctgggcattgtgtcccaggagcccatcctgttt
gactgcagcatcaccgagaacatcgcctacggagacaacagccgtgtcgtgtctcatgag
gagatcgtgagggccgccagggaggccaacatccaccagttcatcgactcactgcctgag
aaatacaacaccagagtgggagacaaagggactcagctgtcgggcgggcagaagcagcgc
atcgccatcgcgcgcgccctcgtcagacagcctcacatcttacttctggatgaagcgaca
tcagctctggatacggagagtgaaaaggtcgtccaggaagcgctggacaaagccagggaa
ggccgcacctgcattgtgatcgcgcaccgcctgtccaccatccagaacgcagacttgatc
gtggtgattcagaacggccaggtcaaggagcacggcacccaccagcagctgctggcccag
aaaggcatctatttctcgatggttcaggctggagcaaagcgctcatga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (10)   
   RefSeq(nuc) (4)   
   GenBank (3)   
   EMBL (3)   
Protein domain (21)   
   Pfam (21)   
All databases (53)   

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