KEGG   Rattus norvegicus (rat): 246772
Entry
246772            CDS       T01003                                 
Symbol
Vps4a
Name
(RefSeq) vacuolar protein sorting-associated protein 4A
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03250  Viral life cycle - HIV-1
rno04144  Endocytosis
rno04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    246772 (Vps4a)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    246772 (Vps4a)
  09143 Cell growth and death
   04217 Necroptosis
    246772 (Vps4a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    246772 (Vps4a)
   03400 DNA repair and recombination proteins [BR:rno03400]
    246772 (Vps4a)
Membrane trafficking [BR:rno04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    246772 (Vps4a)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    246772 (Vps4a)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 TIP49 AAA_14 AAA_16 AAA_22 AAA_25 AAA_5 RuvB_N IstB_IS21 AAA_17 AAA_18 DUF815 AAA_2 AAA_33 RNA_helicase nSTAND3 AAA_24 PhoH ResIII AAA_28 AAA_7 Mg_chelatase NACHT Parvo_NS1 bpMoxR AAA_30 YhdB DUF5906 TPR_2
Other DBs
NCBI-GeneID: 246772
NCBI-ProteinID: NP_663711
RGD: 628810
Ensembl: ENSRNOG00000020351
UniProt: Q793F9 A6IYY4
Position
19:51838411..51858639
AA seq 437 aa
MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC
MQYLDRAEKLKDYLRNKEKHGKKPVKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVME
KPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV
ATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENE
SEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARA
QMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCG
PSRTNPSVMIDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNA
DDLLKVKKFSEDFGQES
NT seq 1314 nt   +upstreamnt  +downstreamnt
atgacaacgtcaaccctccagaaagccatcgatctggtgacaaaagccacagaagaggac
aaagccaagaactacgaggaggcacttcggctctaccagcatgctgtggagtatttcctc
cacgccatcaaatatgaagcccacagtgacaaagccaaggagagcattcgagcaaagtgc
atgcagtacctagacagagcggagaagctgaaggattatttaagaaacaaagagaaacat
ggcaaaaagccagtcaaagagaatcagagtgaaggcaagggtagtgacagtgacagcgaa
ggggataatccagagaaaaagaaattacaagaacagttgatgggtgctgttgtgatggag
aagcccaacattcggtggaatgatgtagctggactggagggagctaaagaagctctcaaa
gaagctgtgattttgccgataaaatttccacacttattcacaggcaaacgtactccttgg
cgaggcatactgctctttgggcccccaggcacaggcaagtcctacctggccaaagccgtg
gcaacagaagccaacaactctaccttcttctctgtgtcctcctcggatctgatgtctaag
tggttgggggaaagcgagaagctagtcaaaaacctgtttgagttggccagacagcacaag
ccttccatcatcttcattgatgaggtggattccctctgcgggtcacggaatgaaaatgag
agcgaggcagcccgaaggatcaaaacagagttcttggtccaaatgcagggagtggggaat
aataatgatgggactcttgttcttggtgccacaaacatcccctgggtgttggattcagcc
atcaggaggaggtttgaaaagcgaatttatatcccattgccagaggaagcggcccgtgcc
cagatgtttcggttacacctgggaagcacacctcacaacctcacagatgctaacatccat
gagctggcccgcaagacagaaggctactcaggagcagatatcagcattatcgtgcgggac
tctctcatgcagccagtcagaaaagtacagtcagcaacacacttcaagaaggtttgtggt
ccttctcgaaccaaccctagtgttatgattgatgatcttctgaccccatgttctccagga
gatccaggggctatagagatgacttggatggatgtccctggtgataaactcttagagcct
gtggtttgcatgtcggacatgctccggtctctggccactacccggcccacagtgaatgca
gatgacctcctgaaagtaaagaaattctctgaggactttggacaggagagttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (12)   
   RefSeq(nuc) (4)   
   GenBank (4)   
   EMBL (4)   
Protein domain (32)   
   Pfam (32)   
All databases (64)   

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