KEGG   Rattus norvegicus (rat): 24873
Entry
24873             CDS       T01003                                 
Symbol
Vdr
Name
(RefSeq) vitamin D3 receptor
  KO
K08539  vitamin D3 receptor
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04928  Parathyroid hormone synthesis, secretion and action
rno04961  Endocrine and other factor-regulated calcium reabsorption
rno04978  Mineral absorption
rno05152  Tuberculosis
rno05207  Chemical carcinogenesis - receptor activation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09152 Endocrine system
   04928 Parathyroid hormone synthesis, secretion and action
    24873 (Vdr)
  09154 Digestive system
   04978 Mineral absorption
    24873 (Vdr)
  09155 Excretory system
   04961 Endocrine and other factor-regulated calcium reabsorption
    24873 (Vdr)
 09160 Human Diseases
  09161 Cancer: overview
   05207 Chemical carcinogenesis - receptor activation
    24873 (Vdr)
  09171 Infectious disease: bacterial
   05152 Tuberculosis
    24873 (Vdr)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rno01009]
    24873 (Vdr)
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    24873 (Vdr)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:rno03310]
    24873 (Vdr)
Protein phosphatases and associated proteins [BR:rno01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     24873 (Vdr)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys4 thyroid hormone receptor-like
    24873 (Vdr)
Nuclear receptors [BR:rno03310]
 1. Thyroid hormone like
  1I. Vitamin D3 like receptor
   24873 (Vdr)
SSDB
Motif
Pfam: zf-C4 Hormone_recep zf-RRPl_C4
Other DBs
NCBI-GeneID: 24873
NCBI-ProteinID: NP_058754
RGD: 3959
Ensembl: ENSRNOG00000054420
UniProt: P13053
Structure
Position
7:complement(130864764..130916757)
AA seq 423 aa
MEATAASTSLPDPGDFDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTC
PFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMIMKRKEEEALKDSL
RPKLSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRVDGSTGSYSPRPTLSFSGNSSS
SSSDLYTTSLDMMEPSGFSNLDLNGEDSDDPSVTLDLSPLSMLPHLADLVSYSIQKVIGF
AKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAG
HTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQ
TYIRCRHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGN
EIS
NT seq 1272 nt   +upstreamnt  +downstreamnt
atggaggcaacagcggccagcacctccctgcccgaccctggtgactttgaccggaacgtg
ccccggatctgtggagtgtgtggagaccgagccacaggcttccacttcaatgctatgacc
tgtgaaggctgcaaaggtttcttcaggcggagcatgaagcgcaaggccctgttcacctgt
cccttcaatggagattgccgcatcaccaaggacaaccggcgacactgccaggcctgccgg
ctcaaacgctgtgtggacatcggcatgatgaaggagttcatcctgacagatgaggaggta
cagcgtaagagggagatgataatgaagagaaaagaggaagaggccttgaaggacagtctg
aggcccaagctatctgaagaacaacagcacatcatagccatcctgctggacgcccaccac
aagacctatgaccccacctacgctgacttcagggacttccggcctccagttcgtgtggac
ggaagtacagggagctattctccaaggcccacactcagcttctccgggaactcctcctcc
tccagctctgacctgtacaccacctcactagacatgatggaaccatccggcttttccaac
ctggatctgaacggagaggattctgatgacccgtctgtgactctggacctgtctcctctc
tccatgctgccccacctggctgaccttgtcagttacagcatccaaaaggtcatcggcttt
gccaagatgatcccaggattcagggatctcacctccgatgaccagattgtcctgcttaag
tcaagcgccattgaggtgatcatgttacgctccaaccagtctttcaccatggatgatatg
tcctgggactgtggcagccaggactacaagtacgacgtcaccgatgtctccaaagctggg
cacaccctggagctgatcgagcccctcataaagttccaggtggggctgaagaagctgaac
ttacatgaggaagagcatgtccttctcatggccatctgcattgtctccccggaccgacct
ggggtccaggacgccaagctggtggaagccattcaggaccgcctatccaacacgctgcag
acctacatccgctgccgccacccgcccccaggcagccaccagctctatgccaagatgatc
cagaaactggccgacctgcggagcctcaacgaggaacactccaaacaataccgctccctc
tccttccagcccgagaatagcatgaagctcacaccccttgtgctggaggtgttcggcaat
gagatctcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
3D Structure (72)   
   PDB (72)   
Protein domain (3)   
   Pfam (3)   
All databases (99)   

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