KEGG   Rattus norvegicus (rat): 24949
Entry
24949             CDS       T01003                                 
Symbol
Syn1
Name
(RefSeq) synapsin-1 isoform a
  KO
K19941  synapsin
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    24949 (Syn1)
Membrane trafficking [BR:rno04131]
 Exocytosis
  Small GTPases and associated proteins
   Rab associated proteins
    24949 (Syn1)
SSDB
Motif
Pfam: Synapsin_C Synapsin Synapsin_N Dala_Dala_lig_C
Other DBs
NCBI-GeneID: 24949
NCBI-ProteinID: NP_062006
RGD: 3797
Ensembl: ENSRNOG00000010365
UniProt: P09951 A6JZQ9
Structure
Position
X:3725745..3780940
AA seq 704 aa
MNYLRRRLSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPV
ASPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVID
EPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKP
DFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLG
TEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKT
YATAEPFIDAKYDVRVQKIGQNYKAYMRTSVSGNWKTNTGSAMLEQIAMSDRYKLWVDTC
SEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQALPR
QRDASPGRGSHSQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQ
QRPPPQGQQHLSGLGPPAGSPLPQRLPSPTAAPQQSASQATPMTQGQGRQSRPVAGGPGA
PPAARPPASPSPQRQAGPPQATRQASISGPAPPKVSGASPGGQQRQGPPQKPPGPAGPIR
QASQAGPGPRTGPPTTQQPRPSGPGPAGRPTKPQLAQKPSQDVPPPIIAAAGGPPHPQLN
KSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFASLFSD
NT seq 2115 nt   +upstreamnt  +downstreamnt
atgaactacctgcggcgccgcctgtcggacagcaacttcatggccaatctgcctaatggg
tatatgacagacctgcagcgcccgcaaccacctccgccgccgccctcagccgccagccct
ggggccactcccggatccgctgctgcctctgccgagagggcctccacagctgctccagtg
gcctctccagcagcccctagtcccgggtcctcggggggcggtggcttcttctcctcgctg
tctaacgcggtcaaacagaccacagcagctgcagccgccaccttcagtgagcaggtgggc
ggtggctctgggggcgcaggccgcgggggcgccgccgccagggtgctgctggtcatcgac
gagccgcacaccgactgggcaaaatacttcaaagggaagaagatccatggagaaattgac
attaaagtagagcaagctgaattctccgatctcaatcttgtggctcatgccaatggtgga
ttctccgtggacatggaagttcttcggaatggggtcaaagttgtgaggtctctgaagcca
gactttgtgctgatccgccagcatgccttcagcatggcacgtaatggagactaccgcagt
ttggtcattgggctgcagtatgctgggatccccagtgttaactctttgcattctgtctac
aacttttgtgacaaaccctgggtgtttgcccagatggttcgactacacaagaagcttgga
acagaggaattccctctgattgatcagactttctatcccaatcataaagagatgctcagc
agcacaacataccctgtagttgtgaagatgggccacgcacactctgggatgggcaaggtc
aaggtagacaaccaacatgacttccaggatattgcaagtgttgtggcactgactaagaca
tatgccactgctgagcccttcattgatgctaaatacgatgtgcgtgtccagaagattggg
cagaactacaaggcctacatgaggacatcagtgtcagggaactggaagaccaatacaggc
tctgctatgcttgagcagattgctatgtctgacaggtacaagttgtgggtagacacgtgc
tcagagatttttgggggacttgacatctgcgcagtggaagcactgcatggcaaggacgga
agggatcacattattgaggtggtgggctcctccatgccactcattggggatcaccaggat
gaagacaagcagctcatcgtggaacttgtggtcaacaagatgactcaggctctgcctcgg
cagcgggatgcttcccctggcaggggttcccacagccagactccatccccaggagccctg
cccttgggccgccagacctcccagcagcctgcaggacctcctgctcaacaacgaccccca
ccccagggaggccctccacaaccaggcccaggacctcagcgccagggacccccgctgcaa
cagcgcccacccccacaaggccagcaacatctttctggccttggacccccagctggcagc
cctctgccccagcgcctaccaagtcccacagcagcacctcagcagtccgcctctcaggcc
acaccaatgacccagggtcaaggccgccagtcacggccagtggcaggaggccccggagca
cctccagcagcccgcccgccggcctccccatctccacagcgtcaggcagggcccccacag
gctacccgtcaggcatctatctctggtccagctccaccgaaggtctcaggagcctcaccc
ggagggcagcagcgccaaggccctccccagaaacccccaggccctgctggtcccattcgt
caggccagccaggcaggtcccggacctcgcactgggccacccaccacacagcagccccgg
cccagcggcccaggtcctgctggacgtcccaccaaaccacagctggctcagaaacccagc
caggatgtgccaccacccatcattgctgctgccgggggacccccgcacccccagctcaac
aaatcccagtctctgaccaatgccttcaaccttccagagccagccccgcccaggcccagc
cttagccaggatgaggtgaaagctgagaccatccgcagcctgaggaagtctttcgccagc
ctcttctccgactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (14)   
   RefSeq(nuc) (2)   
   GenBank (6)   
   EMBL (6)   
3D Structure (2)   
   PDB (2)   
Protein domain (4)   
   Pfam (4)   
All databases (34)   

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