KEGG   Rattus norvegicus (rat): 25019
Entry
25019             CDS       T01003                                 
Symbol
Xrcc6
Name
(RefSeq) X-ray repair cross-complementing protein 6
  KO
K10884  ATP-dependent DNA helicase 2 subunit 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    25019 (Xrcc6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    25019 (Xrcc6)
   03400 DNA repair and recombination proteins [BR:rno03400]
    25019 (Xrcc6)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    25019 (Xrcc6)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA-PK complex
     25019 (Xrcc6)
SSDB
Motif
Pfam: Ku_N Ku Ku_C SAP SAP30_Sin3_bdg SAP_new25 Rho_N
Other DBs
NCBI-GeneID: 25019
NCBI-ProteinID: NP_620780
RGD: 2643
Ensembl: ENSRNOG00000006392
UniProt: Q6AZ64
Position
7:115423026..115443884
AA seq 608 aa
MSEWESYYKTEGEEEEEEEQSPDTNGEYKYSGRDSLIFLVDASRAMFESQGEDELTPFDM
SIQCIQSVYTSKIISSDRDLLAVVFYGTEKDKNSVNFKSIYVLQDLDNPGAKRVLELDRF
KGQQGKKHFRDTIGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDDPHGNDSAK
ASRARTKASDLRDTGIFLDLMHLKKRGGFDVSLFYRDIISIAEDEDLGVHFEESSKLEDL
LRKVRAKETKKRVLSRLKFKLGKDVALMVGVYNLVQKANKPFPVRLYRETNEPVKTKTRT
FNVNTGSLLLPSDTKRSLTFGTRQIVLEKEETEELKRFDEPGLILMGFKPMVMLKNHHYL
RPSLFLYPEESLVNGSSTLFSALLTKCVEKEVIAVCRYTARKNVSPYFVALVPQEEELDD
QNIQVTPAGFQLVFLPYADDKRKVPFTEKVMANPEQIDKMKAIVQKLRFTYRSDSFENPV
LQQHFRNLEALALDMMESEQVVDLTLPKVEAIKKRLGSLADEFKELVYPPGYNPEGKIAK
RKADNEGSASKKPKVELSEEELKDLFAKGTLGKLTVPALRDICKAYGLKSGPKKQELLEA
LSRHLEKN
NT seq 1827 nt   +upstreamnt  +downstreamnt
atgtcagagtgggaatcctactacaaaactgagggtgaggaagaggaagaggaggagcag
agccctgacacaaatggagaatataaatattcaggaagagatagtttgatttttctggtt
gacgcctccagggctatgtttgaatctcagggtgaagacgagctcacaccttttgatatg
agcatccagtgtatccagagtgtgtacaccagtaagatcataagcagcgatcgggatctc
ttggcagtggtgttctatggtaccgagaaagacaaaaattcagtgaacttcaaaagtatt
tatgtcttacaagatctggataacccaggagctaaacgagtgttagagcttgaccgcttt
aagggacaacaggggaaaaaacatttccgagacacaattggccatgggtctgactactct
ttgagtgaagtgctctgggtctgtgccaacctcttcagcgacgtccagttcaagatgagt
cataagaggatcatgctattcaccaatgaagatgacccccatggtaatgacagtgccaaa
gccagccgggccaggaccaaagccagcgatctgcgggacactgggatcttcctcgacttg
atgcacctgaagaagcgagggggctttgacgtgtccttgttctacagagacatcatcagc
atcgctgaggatgaggacctcggggttcactttgaggagtcaagcaagctggaagacctg
ctaaggaaggttcgagccaaggagaccaaaaagcgagtgctgtccaggttaaagtttaag
ctcggcaaagacgtagcactcatggtgggcgtttataacttggtccagaaagctaacaag
ccttttccagtgaggctgtatcgagaaacaaacgaaccagtgaaaactaagacaaggact
tttaatgtaaacacaggcagtctgctcctgcccagtgataccaagcggtctctgactttt
gggacgcgtcagattgtgctggagaaagaggaaacagaggagctgaagcggtttgatgag
ccaggtttgattctcatgggctttaagcccatggtaatgctgaagaaccaccactacctg
aggccctctctgttcctgtacccagaggagtccttggtcaacgggagctcaaccttgttc
agcgccctgctcaccaagtgtgtggagaaggaggtcatagcagtgtgtagatacacagcc
cgaaagaatgtctccccttattttgtggctttggtgccacaggaagaggagctagatgat
cagaacattcaggtgactcccgcaggcttccagcttgtcttcctcccttacgccgatgac
aagcggaaggtgccctttacggagaaggtgatggccaacccggaacagatagacaagatg
aaggccattgttcaaaagctccgctttacatacaggagcgacagtttcgagaacccagtg
ctgcagcagcacttccggaacctggaggccctagctttggacatgatggagtcggagcaa
gtggtagatctgacactgcccaaggttgaagccataaagaaaagactgggctccctggca
gatgagtttaaagaacttgtctaccctccaggttataatcctgagggaaaaattgccaag
agaaaagcagacaatgaaggttctgcaagtaaaaagcccaaggtagagttatcagaagag
gagctgaaggacctttttgccaagggcacactgggcaagctcactgtgcctgcactgagg
gacatctgcaaggcctatgggctaaagagtggaccgaagaagcaggaactactcgaggct
ctcagcagacacttggagaagaactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (9)   
   RefSeq(nuc) (3)   
   GenBank (3)   
   EMBL (3)   
Protein domain (7)   
   Pfam (7)   
All databases (31)   

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