KEGG   Rattus norvegicus (rat): 25049
Entry
25049             CDS       T01003                                 
Symbol
Atxn1
Name
(RefSeq) ataxin-1
  KO
K23616  ataxin 1/1L
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04330  Notch signaling pathway
rno05017  Spinocerebellar ataxia
rno05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    25049 (Atxn1)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05017 Spinocerebellar ataxia
    25049 (Atxn1)
   05022 Pathways of neurodegeneration - multiple diseases
    25049 (Atxn1)
SSDB
Motif
Pfam: ATXN-1_C AXH
Other DBs
NCBI-GeneID: 25049
NCBI-ProteinID: NP_036858
RGD: 3624
Ensembl: ENSRNOG00000016998
UniProt: Q63540 A6J718
Position
17:18943397..19354751
AA seq 789 aa
MKSNQERSNECLPPKKREIPATSRPSEEKATALPSDNHCVEGVAWLPSTPGSRGHGGGRH
GPAGTSGEHGLQGMGLHKALSAGLDYSPPSAPRSVPTANTLPTVYPPPQSGTPVSPVQYA
HLSHTFQFIGSSQYSGPYAGFIPSQLISPPGNPVTSAVASAAGATTPSQRSQLEAYSTLL
ANMGSLSQAPGHKVEPPPQQHLGRAAGLVNPGSPPPTQQNQYIHISSSPQSSGRATSPPI
PVHLHPHQTMIPHTLTLGPSSQVVVQYSDAGGHFVPRESTKKAESSRLQQAMQAKEVLNG
EMEKSRRYGASSSVELSLGKTSSKSVPHPYESRHVVVHPSPADYSSRDTSGVRGSVMVLP
NSSTPSADLETQQATHREASPSTLNDKSGLHLGKPGHRSYALSPHTVIQTTHSASEPLPV
GLPATAFYAGAQPPVIGYLSSQQQAITYAGGLPQHLVIPGTQPLLIPVGSPDMDTPGAAS
AIVTSSPQFAAVPHTFVTTALPKSENFNPEALVTQAAYPAMVQAQIHLPVVQSVASPAAA
SPTLPPYFMKGSIIQLANGELKKVEDLKTEDFIQSAEISNDLKIDSSTVERIEDSHSPGV
AVIQFAVGEHRAQVSVEVLVEYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISLT
LKNLKNGSVKKGQPVDPASALLKHAKTDSLAGSRHRYAEQENGINQGSAQVLSENGELKF
PEKIGLPAAPFLTKIEPSKPTATRKRRWSAPETRKLEKSEDEPPLTLPKPSLIPQEVKIC
IEGRSNVGK
NT seq 2370 nt   +upstreamnt  +downstreamnt
atgaaatctaaccaagagcggagcaatgaatgcctgcctcccaagaaacgtgagatcccc
gccaccagtcggccctccgaggagaaggccactgctctgcccagcgacaaccactgcgtg
gagggtgtggcatggctccccagcacccctggcagccgcggccacgggggtgggcggcac
gggccagcagggacttccggggaacatggtttacaaggaatgggtttacataaagcactg
tccgcagggctggattactccccacccagtgcccccaggtcggtccccacagccaacacg
ctgcccaccgtgtaccctcctcctcagtcagggacgccggtgtctcctgtgcagtacgcc
cacctatcacataccttccagttcattgggtcctcccagtatagtgggccttacgcgggc
tttatcccttcccagctgatctccccaccaggcaacccagtcaccagtgcggtggcctcg
gctgcaggggccaccactccatcacagcgctcccagctggaggcatattccaccctgctg
gccaacatgggcagtctgagccaggcaccaggacacaaggttgagccccctccgcagcag
cacctcggcagggctgcgggattagtcaacccggggtcccctccacctacccagcagaac
cagtacattcacatttccagctctccacagagctccgggcgggcaacatctccacccatc
ccggtccacctccatccccatcagacgatgatcccgcacacgctcaccctggggccttca
tcccaggtggtcgtgcaatacagtgacgccggaggccactttgttcctcgagagtccacc
aaaaaagcagaaagcagcaggttgcagcaggctatgcaggccaaggaggtcctcaatggg
gagatggagaaaagccggaggtatggggcgtcatcttctgtggagctgagcctggggaag
acgagcagcaagtcagtgcctcacccctatgagtccaggcatgtggtggtccacccgagc
ccagcagactacagcagtcgtgatacctccggggtccgtggatctgtgatggtcctgccc
aacagcagcacaccctcagccgacctggagacacagcaggccacacatcgagaggcctcc
ccatccaccctcaatgacaagagcggtttgcacctagggaagcccggccacaggtcctac
gcgctgtccccacacacggtcattcagaccacacacagcgcatcagagcctctcccggtg
ggcctaccagccacggccttctatgctggcgctcaacctcctgtcatcggctatctgagt
agccagcagcaagcaatcacctatgctggtggtctgccccagcacctggtgatcccaggt
acccagcccctgctcatcccagtgggcagccctgacatggacacacctggggcagcctcg
gccatagtgacgtcatcgccccagtttgctgcagtacctcacacgtttgtcaccaccgcc
ctgcccaagagcgagaacttcaacccagaggctctggtcacccaggcagcctacccagcc
atggtgcaggcccagatccacctgccggtggtacagtccgtggcatcccctgccgcggca
tcacccacgctgccgccatatttcatgaaaggctccatcatccagctggccaacggggag
ctgaagaaggtagaggatctgaagacagaggatttcatccagagtgcagagattagcaat
gacctcaagatcgactccagtactgtggagaggatcgaggacagccacagccccggtgtg
gccgtgatacaatttgctgttggtgaacaccgagcccaggtcagtgtcgaagttttggta
gagtatcctttttttgtatttggacagggctggtcatcctgctgtcccgagcggaccagc
cagctctttgatctgccgtgttccaaactctccgttggggacgtctgcatctcgctcacc
ctcaagaacctgaagaatggctctgttaaaaagggccagcccgtggaccctgccagtgcc
ctgctgaagcacgcaaagaccgacagcctggctggcagcagacacagatacgccgagcag
gaaaacggaatcaaccaggggagcgcccaggtgctctctgagaacggcgaactgaagttt
ccagaaaaaattggattgcctgcagcacccttcctcaccaaaatagaaccgagcaagccc
acagccacgaggaagaggaggtggtcggcgccggagacccgtaaactggagaagtcggag
gacgagccacctttgactcttcccaagccttcgctcattcctcaggaggttaagatctgc
atcgaaggccgatctaacgtgggcaagtag

  All links  
Ontology (1)   
   KEGG BRITE (1)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (22)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (19)   
DNA sequence (19)   
   RefSeq(nuc) (19)   
Protein domain (2)   
   Pfam (2)   
All databases (54)   

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