KEGG   Rattus norvegicus (rat): 25133
Entry
25133             CDS       T01003                                 
Symbol
Pcdhb12
Name
(RefSeq) protocadherin-3 precursor
  KO
K16494  protocadherin beta
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:rno04515]
    25133 (Pcdhb12)
Cell adhesion molecules [BR:rno04515]
 Cadherins
  Protocadherins
   25133 (Pcdhb12)
SSDB
Motif
Pfam: Cadherin Cadherin_2 Cadherin_C_2 Cadherin_3 REJ
Other DBs
NCBI-GeneID: 25133
NCBI-ProteinID: NP_775122
RGD: 3266
Ensembl: ENSRNOG00000033719
UniProt: Q63418
Position
18:29413756..29416774
AA seq 797 aa
METALAKIPQQRQVFFLTILSLLWKSSSEAIRYSMPEETESGYMVANLAKDLGIRVGELS
SRGAQIHYKGNKELLQLDAETGNLFLKEKLDRELLCGETEPCVLNFQIILENPMQFFQTE
LQLTDINDHSPEFPNKKMLLTIPESAHPGTVFPLKAAQDSDIGSNAVQNYTVNPNLHFHV
VTHSRTDGRKYPELVVDRALDREEQPELTLILTALDGGTPRRSGTTTVHIEVVDINDNSP
QFVQSLYKVQVPENNPLNAFVVTVSATDLDAGVYGNVTYSLFQGYGVFQPFVIDEITGEI
HLSKELDFEEISNHNIEIAATDGGGLSGKCTVAVQVLDVNDNAPELTIRKLTVLVPENSA
ETVVAVFSVSDSDSGDNGRMVCSIPNNIPFLLKPTFENYYTLVTEGPLDRENRAEYNITI
TVSDLGTPRLTTQHTITVQVSDINDNAPAFTQTSYTMFVHENNSPALHIGTISATDSDSG
SNAHITYSLLPPDDPQLALDSLISINVDNGQLFALRALDYEALQSFEFYVGATDGGSPAL
SSQTLVRMVVLDDNDNAPFVLYPLQNASAPCTELLPRAAEPGYLITKVVAVDRDSGQNAW
LSFQLLKATEPGLFSVWAHNGEVRTTRLLSERDAQKHKLLLLVKDNGDPLRSANVTLHVL
VVDGFSQPYLPLAEVAQDSMQDNYDVLTLYLVIALASVSSLFLLSVVLFVGVRLCRRARE
ASLGDYSVPEGHFPSHLVDVSSAGTLSQSYQYEVCLNGGTRTNEFNFLKPLFPILPTQAA
AAEERENAVVHNSVGFY
NT seq 2394 nt   +upstreamnt  +downstreamnt
atggagacagcactagcaaaaataccacagcaaaggcaagtcttttttcttactatattg
tcgttattgtggaagtctagctctgaggccattagatattccatgccagaagaaacagag
agtggctatatggtggctaacctggcgaaagatctggggatcagggttggagaactgtcc
tctagaggagctcaaatccattacaaaggaaacaaagaacttttgcagctggatgcagag
actgggaatttgttcttaaaggaaaaactagacagagaactgctgtgtggagagacagaa
ccctgtgtgctgaacttccagatcatactggaaaaccctatgcagttcttccaaactgaa
ctgcagctcacagatataaacgaccattctccagagttccccaacaagaaaatgcttcta
acaattcctgagagcgcccatccaggaactgtgtttcctctgaaggcagctcaggactct
gacatagggagcaacgctgttcagaactacacagtcaatcccaacctccatttccacgtc
gttactcacagtcgcacagatggcaggaaatacccagagctggtggtggacagagccctg
gatagggaggagcagcctgagctcactttaatcctcactgctctggatggtggaacccca
cgccgctcaggaaccaccacagttcacatagaagttgtggacatcaatgataactccccc
cagtttgtacagtcactctataaggtgcaagttcctgagaataatcccctcaatgccttt
gttgtcacggtctctgccacggatttagatgctggggtatatggcaatgtgacctattct
ctgtttcaagggtatggggtatttcaaccatttgtaatagacgaaatcactggagaaatc
catctgagcaaagagctggattttgaggaaattagcaatcataacatagaaatcgcagcc
acagatggaggaggcctttcaggaaaatgcactgtggctgtacaggtgttggatgtgaat
gacaacgccccagagttgacaattaggaagctcacagtcctggtcccagaaaattccgca
gagactgtagttgctgtttttagtgtttctgattctgattcgggggacaatggaaggatg
gtgtgttctattccgaacaatatcccatttctcctgaaacccacatttgagaattattac
acgttagtgactgaggggccacttgatagagagaacagagctgagtacaacatcaccatc
acggtctcagatctgggcacacccaggctcacaacccagcacaccataacagtgcaagtg
tccgacatcaacgacaacgcccctgccttcacccaaacctcctacaccatgtttgtccac
gagaacaacagccccgccctgcacataggcaccatcagtgccacagactcagactcaggc
tccaatgcccacatcacctactcgctgctgccgcctgatgacccgcagctggccctcgac
tcgctcatctccatcaatgttgacaatgggcagctgttcgcgctcagagctctagactat
gaggctctgcagtccttcgagttctacgtgggcgctacagatggaggctcgcctgcactc
agcagccagactctggtgcggatggtggtgctggatgacaatgacaatgcccccttcgtg
ctctacccactgcagaatgcctcagcaccctgtactgagctactgcctagggcagcagag
cccggctacctgatcaccaaagtggtggctgtggatcgcgactctggacagaatgcttgg
ctgtcgttccagctacttaaagctacagagccagggctgttcagtgtatgggcacacaat
ggtgaagtgcgcaccactaggctgctgagtgagcgagatgctcagaagcacaagctactg
ctgctggtcaaggacaatggcgatcctctgcgctctgccaatgtcactcttcacgtgcta
gtggtggatggcttctcgcagccttacctaccattggctgaggtggcacaggattccatg
caagataattacgacgttctcacactgtacctagtcattgccttggcatctgtatcttct
ctcttcctcttgtctgtagtgctgtttgtgggggtgaggctgtgcaggagggccagggag
gcctccttgggtgactactctgtgcccgagggacactttcctagccacctagtggatgtc
agcagtgctgggaccctgtcccagagttatcaatatgaggtgtgtcttaatggaggtact
agaacaaatgagtttaactttcttaaaccattgtttcctatccttccgacccaggctgct
gctgctgaagaaagagaaaacgctgttgtgcacaatagcgttggattctattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (8)   
   RefSeq(nuc) (2)   
   GenBank (3)   
   EMBL (3)   
Protein domain (5)   
   Pfam (5)   
All databases (25)   

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