KEGG   Rattus norvegicus (rat): 25216
Entry
25216             CDS       T01003                                 
Symbol
Sdc1
Name
(RefSeq) syndecan-1 precursor
  KO
K06257  syndecan 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04512  ECM-receptor interaction
rno04514  Cell adhesion molecules
rno04820  Cytoskeleton in muscle cells
rno05144  Malaria
rno05205  Proteoglycans in cancer
rno05418  Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    25216 (Sdc1)
   04514 Cell adhesion molecules
    25216 (Sdc1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    25216 (Sdc1)
 09160 Human Diseases
  09161 Cancer: overview
   05205 Proteoglycans in cancer
    25216 (Sdc1)
  09174 Infectious disease: parasitic
   05144 Malaria
    25216 (Sdc1)
  09166 Cardiovascular disease
   05418 Fluid shear stress and atherosclerosis
    25216 (Sdc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    25216 (Sdc1)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:rno04090]
    25216 (Sdc1)
   00535 Proteoglycans [BR:rno00535]
    25216 (Sdc1)
Membrane trafficking [BR:rno04131]
 Exocytosis
  Calcium ion-dependent exocytosis
   Acrosomal exocytosis proteins
    25216 (Sdc1)
CD molecules [BR:rno04090]
 Proteins
  25216 (Sdc1)
Proteoglycans [BR:rno00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   25216 (Sdc1)
SSDB
Motif
Pfam: Syndecan Glycophorin_A Romo1
Other DBs
NCBI-GeneID: 25216
NCBI-ProteinID: NP_037158
RGD: 3648
Ensembl: ENSRNOG00000059947
UniProt: P26260 A6HAM5
Position
6:37282041..37304503
AA seq 313 aa
MRRAALWLWLCALALRLQPALPQIVTANVPPEDQDGSGDDSDNFSGSGTGALPDMTLSRQ
TPSTWKDVWLLTATPTAPEPTSRDTEATLTSILPAGEKPEEGEPVAHVEAEPDFTARDKE
KEATTRPRETTQLPVTQQASTAARATTAQASVTSHPHGDVQPGLHETLAPTAPGQPDHQP
PSVEDGGTSVIKEVVEDETTNQLPAGEGSGEQDFTFETSGENTAVAGVEPDLRNQSPVDE
GATGASQGLLDRKEVLGGVIAGGLVGLIFAVCLVAFMLYRMKKKDEGSYSLEEPKQANGG
AYQKPTKQEEFYA
NT seq 942 nt   +upstreamnt  +downstreamnt
atgagacgtgcggcgctctggctttggctctgcgcgctggcgctgcgcctgcagcctgcc
ctcccgcaaattgtcaccgcaaatgtgcctcctgaagaccaagatggctctggggacgac
tcagacaacttctctggctcaggcacaggtgctttgccagatatgactttgtcacggcag
acaccttccacttggaaggatgtgtggctcctgacagctacacccacagctccagaaccc
accagcagggataccgaggccaccctcacctctatcctgccggctggagagaagcctgag
gagggagagcccgtggcccacgtggaagcagagcctgacttcactgctcgggacaaggag
aaggaggccaccaccaggcctagggagaccacacagctcccagtcacccaacaggcctca
acagcagccagagccaccacggcccaggcatctgtcacgtctcatccccacggggatgtg
caacctggcctccacgagaccttggctcccacagcacccggccaacctgaccatcagcct
ccaagtgtggaggatggaggcacttctgtcatcaaagaggttgtggaggatgaaactacc
aatcagcttcctgcaggagagggctctggagaacaagacttcacctttgaaacatctggg
gagaacacagctgtggctggcgtcgagcctgaccttcggaatcagtccccagtggatgaa
ggagccacaggtgcttctcagggccttttggacaggaaggaagtgctgggaggtgtcatt
gctggaggcctggtgggcctcatctttgctgtgtgcctggtggctttcatgctataccgg
atgaagaagaaggacgaaggcagttactccttggaggagcccaaacaagccaatggcggt
gcctaccagaaacccaccaagcaggaagagttctacgcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (11)   
   RefSeq(nuc) (1)   
   GenBank (5)   
   EMBL (5)   
Protein domain (3)   
   Pfam (3)   
All databases (35)   

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