KEGG   Rattus norvegicus (rat): 25276
Entry
25276             CDS       T01003                                 
Symbol
Sycp1
Name
(RefSeq) synaptonemal complex protein 1
  KO
K19533  synaptonemal complex protein 1
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    25276 (Sycp1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Meiosis-specific proteins
   Synaptonemal complex
    25276 (Sycp1)
SSDB
Motif
Pfam: SCP-1
Other DBs
NCBI-GeneID: 25276
NCBI-ProteinID: NP_036942
RGD: 3794
Ensembl: ENSRNOG00000016835
UniProt: Q03410
Position
2:complement(192985164..193145234)
AA seq 946 aa
MSSLSKNRENIDTDPAFQKLSILPMLEQVANSGSCHYQEGVNDSDFENSEPMSRLYSKLY
KEAEKIKKWKVSIESELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENK
DLIKENNATRHWCNLLKETCARSAEKTSKYEYEREETRQVYVDLNNNIEKMILAFEELRV
QAENARLEMHFKLKEDHEKIQHLEEEYQKEVNNKENQVSLLLIQSTEKENKMKDLTFLLE
ESRDKANQLEEKTKLQDENLKELNEKKDHLTSELEDIKMSMQRSMSTQKTLEEDLQIATK
TIYQLTEEKEAQMEELNKAKTTHSLVVTELKATTCTLEELLRTEQQRLENNEDQLKLITM
ELQKKSSELEEMTKFKNNKEVELEELKTILAEDQKLLDEKKQVEKLAEELQGKEQELTFL
LQTREKEIHDLEVQVTVTKTSEEHYLKQVEEMKTELEKEKLKNIELTANCDMLLLENKKL
VQEASDMVLELKKHQEDIINCKKQEERMLKQIETLEEKEMNLRDELESVRKEFIQQGDEV
KCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKSKNIEELHQENKALKKKS
SAENKQLNAYEIKVNKLELELASTKQKFEEMINNYQKEIEIKKISEEKLLGEVEKAKATV
DEAVKLQKEIDLRCQHKIAEMVALMEKHKHQYDKIVEERDSELGLYKNREQEQSSAKVAL
ETELSNIRNELVSLKKQLEVEKEEKEKLKMEQENTAILTDKKDKKIQASLLESPEATSWK
FDSKTTPSQNISRLSSSMDSGKSKDNRDSLRASAKSILSTTVTKEYTVKTPTKKSIYQRE
NKYLPTGGSNKKRKTVFEFDVNSDSSETTDLLSLVSEEDISNRIYNNNTPDSHLLVKTPK
QTPLSLSTPASFTKFGSLKKMREDRWATIAKIDRKRRLKEAEKLFT
NT seq 2841 nt   +upstreamnt  +downstreamnt
atgtccagtctatcaaaaaatcgggaaaacattgatacagatcccgcttttcaaaaactt
agcattttgcccatgcttgaacaggttgcaaattctggcagttgccactatcaggaagga
gtaaatgactctgattttgagaattcagagccaatgagcagactgtactcaaagctgtat
aaagaggctgaaaagataaaaaagtggaaagtgagcatagagtctgaactgaagcagaaa
gaaaataagttgcaagaaaacagaaagataattgaagcccagcgaaaagccattcaggaa
cttcagtttgaaaatgaaaaagtaagcttgaaattagaagaagaaattcaagaaaataaa
gatttaatcaaggagaataatgctacaagacattggtgtaatttactcaaggaaacctgt
gctagatctgcagaaaagacaagtaaatatgaatatgagcgagaagaaaccagacaagtt
tatgtggatctaaataataacattgagaaaatgatactagcttttgaggaacttcgtgtg
caagctgagaatgccaggctggaaatgcactttaagttaaaggaagatcatgaaaaaatc
caacatcttgaagaagaatatcagaaggaagtaaacaacaaggaaaaccaggtatcacta
ctattgatccaaagtactgagaaagaaaataaaatgaaagatttaacatttctgctagag
gaatccagagataaagctaatcaattagaggaaaaaacaaaattacaagatgaaaactta
aaagaattaaatgaaaagaaggatcatttaacatcagaacttgaagatattaaaatgtcc
atgcaaagaagtatgagcactcagaagactttagaggaagatttacagatagcaacaaaa
acgatttatcagctcactgaagaaaaagaagctcaaatggaagaactcaacaaagctaaa
actactcactcacttgtggtgactgaacttaaagccactacatgtaccttggaggaatta
ctgagaacagaacagcaaagattggaaaataatgaggatcaactgaaactgattactatg
gagctccagaagaaatcaagtgaactagaagagatgactaaatttaaaaataacaaagaa
gtggaacttgaagaattaaaaaccatattggcagaagaccaaaaacttttagatgaaaag
aaacaagttgagaagcttgctgaagaattacaagggaaagaacaagaactaactttcctt
ttgcaaaccagagagaaagaaatccatgatttggaagtacaagtaactgtcactaaaaca
agtgaagaacattatttaaaacaggttgaagaaatgaaaactgagcttgaaaaagagaaa
cttaagaatattgaattaactgcaaactgtgacatgcttttgcttgagaacaaaaaattg
gtacaagaagcaagtgatatggtcctagaactcaagaaacatcaagaagatatcattaat
tgcaaaaagcaagaagaaaggatgttgaaacaaatagaaactttggaagaaaaagaaatg
aatttaagggatgaactggaatcagtaagaaaagagttcatacagcaaggagatgaagtt
aaatgtaaattggacaagagtgaagaaaatgctcgaagcattgaatatgaagttttaaag
aaagaaaagcagatgaagatattagaaaataagtgtaataatttaaagaaacaaatcgaa
aataaaagcaagaatattgaagagcttcaccaggagaataaagccttgaaaaaaaaaagt
tcagcagaaaacaaacaactgaatgcatatgagataaaggtcaataaattagagttggaa
ttagcaagtaccaagcaaaaatttgaagaaatgattaacaactaccagaaagaaattgag
ataaaaaagatttcagaagaaaagcttttgggagaggttgagaaagccaaagcaacagtt
gatgaagccgtaaagttacagaaagaaattgatttacgatgccaacataaaatagctgag
atggtagcacttatggaaaaacataagcaccaatatgataagattgttgaagaaagagac
tcagaattaggactttataaaaacagagaacaggaacagtcttcagcaaaggttgctttg
gagactgaattatctaatatcagaaacgaacttgtatcccttaagaagcaacttgaagta
gaaaaagaagaaaaagagaaattaaaaatggaacaagaaaacacagctattctcacagat
aaaaaagacaagaaaatacaggcatctttgctggaatcacctgaagccactagttggaaa
tttgattctaaaacaactccctcacaaaatatatctcggctttcctcatcaatggatagt
ggcaaatccaaagataacagagatagtctgcgggcatctgccaaaagcattttatctaca
acagttacaaaggaatatacagtgaagacaccaactaaaaagagcatatatcaaagagaa
aacaagtatttacctactggaggaagtaataaaaagagaaaaactgtctttgaatttgat
gttaattcagatagttcagaaactactgatcttttgagcttggtttcagaggaagatata
tcaaacaggatttataataataatacaccagattctcatctattagtcaaaactcccaaa
cagactcctttatctttatcaactcctgcatcttttacgaagtttggaagtctgaaaaaa
atgagagaagaccgttgggcaacgattgctaaaattgataggaaaagaagactaaaggaa
gcagaaaagttatttacttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (12)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (10)   
DNA sequence (12)   
   RefSeq(nuc) (10)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (34)   

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