KEGG   Rattus norvegicus (rat): 252897
Entry
252897            CDS       T01003                                 
Symbol
Pcdhga11
Name
(RefSeq) protocadherin gamma-A11
  KO
K16495  protocadherin gamma subfamily A
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:rno04515]
    252897 (Pcdhga11)
Cell adhesion molecules [BR:rno04515]
 Cadherins
  Protocadherins
   252897 (Pcdhga11)
SSDB
Motif
Pfam: Cadherin Cadherin_2 Cadherin_C_2 Cadherin_tail RET_CLD1 Cadherin_3
Other DBs
NCBI-GeneID: 252897
NCBI-ProteinID: NP_001032230
RGD: 621232
UniProt: I6LBW8
Position
18:29834606..29919095
AA seq 933 aa
MANQLQRLDRRALVPLCIFLGTLLTFGTGQIRYSVPEETDKGFFVGNISKDLGLEPWEVA
DRGVRIVSRGKSQLFSLNPRGGSLVTAGRIDREELCDTVPSCLLNLEILVEETLKIYGVE
VEVMDINDNAPSFREEEVEIKVSEHTSPGSRFPLPKARDPDAGMNSLQSYQLSPSSYFSL
QVRGGTDGDKNPELVLEESLDREKEASHHLLLTALDGGDPIRTGMVPIRVVVLDVNDHIP
KFTQSVYRASVPENLSSGTRVLVVNATDPDEGINGEVMYTFRKMKSKASEIFQLNSQTGE
VLVGKPLDFEKYRFYEMEIQGQDGGGLLSTTMLLITVEDVNDNVPEITVTSSINSVPENS
PSGTVIALLNVQDQDSGENGQVSCFIPSGLPFKLEKTYGNYYKLVTDSELDREQVESYNI
TLIAKDQGSPPLSTATHLLLKVADANDNPPVFTHSSYSAYIPENNPRGSSIFSVTAIDRD
SRENAQVTYSLAEYSIQGSPLSSYVSINSDTGVLYALQSFDYEQFQTLQLGVTASDSGNP
PLSSNISLTLFVLDQNDNTPEILYPSLPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQ
NAWLSYRLLKASEPGLFSVGLHTGEVRTARAMMDKDALKQSLVVTVQDHGQPPLSATVRL
TVAVADSIPEVLEDLVSLESPANRDESSLTLYLVVAITAVSCIFLIFVMVLLALRLRRWH
SSRLLQAASGLAGVPPSHFVGVDGMHAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLIS
QESCGKSEPLLIPEDSATVLGKCEPTDIQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWP
NNQFDTEMLQAMILASASEAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPG
SNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
NT seq 2802 nt   +upstreamnt  +downstreamnt
atggcgaatcagcttcagcgcctggaccgccgcgcgctggtcccgctgtgcattttcctg
gggaccttgctgacctttgggacaggacaaatccgatattcggttccagaagagacagat
aaaggcttcttcgtaggcaacatctccaaagacctggggctggagccctgggaggtcgcg
gaccgcggagtccgcatcgtctccagaggaaaatcgcagcttttctctctgaatccgcga
ggcggcagcttggtgactgcgggtaggatcgatcgtgaagagctatgtgatacggtgccc
tcctgcttgctgaatttggaaattctcgtggaggaaaccctgaagatttatggagtggag
gtggaagtaatggacattaatgataacgcccccagcttccgggaagaagaggtagagatc
aaagtcagcgagcacactagtcctgggtcgcgatttccacttcctaaggctagggatcca
gatgcagggatgaactccctccagagctaccagctcagcccaagcagttatttttccttg
caggtgagaggcgggactgatggggacaagaatccagagctagtgctggaggagagcctg
gaccgggagaaagaggcatcccaccacctcctcctcacagccttggatgggggagatccc
atccgcacggggatggttcccatccgcgtggtggtcctcgacgtaaatgaccacattcca
aaatttacacagtctgtgtatagagcgagtgtgcctgaaaacctcagctccggaacgcgg
gtgctcgtggtaaatgccacagacccagatgagggtatcaacggggaagtgatgtacact
ttccggaaaatgaaaagcaaagcttctgaaatatttcaactgaattctcaaactggagaa
gttctagtcggaaagccgctggattttgaaaaatatagattctatgagatggaaattcaa
ggccaagatggtggggggttgttgagcaccaccatgttgctgatcacggttgaagatgtg
aatgacaacgttccagagataactgtcacctcttccatcaactcagtgccggaaaattct
ccttcgggtacagtaattgctcttctaaacgttcaggatcaagattctggagaaaatggt
caggtctcttgcttcattcctagtggtcttccttttaagttagagaaaacctatggaaat
tattataaattggtaaccgatagtgaactggaccgggagcaggtagagagctacaatatt
acactgatcgccaaagatcagggaagtccacccttgtctacagcaactcacctcctgctc
aaagtggcagatgccaatgacaatcctccagttttcactcactcgtcttactcggcctac
attcctgaaaacaaccctagaggttcctccatcttctcagtgaccgccattgatagggac
agcagagaaaatgcccaggtcacgtactctctggctgagtacagtatccagggatcacct
ctgtcctcttacgtttctatcaactcagacaccggtgtgctgtatgccttgcaatccttc
gactatgagcagttccagaccctacaactgggagtgaccgctagtgacagtgggaaccca
ccattaagcagcaatatttcactgacccttttcgtgctggaccagaatgacaacactcca
gagatcctatacccctctctccctactgatggctccactggtgtggaattggcgcctcgc
tccgcagagccaggttatttagtgaccaaggtggtggctgtagacagagactccgggcag
aacgcttggctgtcctaccgcctgctcaaagccagcgagccaggcctcttctccgtgggg
ctgcacacgggggaggtgcgcacggcccgagccatgatggataaagatgctctcaagcag
agcctcgttgtaactgtgcaggatcacggccagcctcctctctccgccactgtcaggctc
accgtggcggtggctgacagcattccagaggttctggaggacttggttagtctagagtct
cctgccaaccgggatgagtcgagtctcaccctctacctagtggtggccatcactgcagtc
tcctgcatcttcctcatctttgtcatggtactgctggctctcaggcttcggcgctggcac
tcatcacgtctgctccaggctgccagcggattggctggcgtgcctccttcgcactttgtg
ggtgtggacgggatgcatgctttcctccagacctattcccacgaagtttcgctcactgca
gactcaaggaagagtcacctgatcttcccgcagcccaactatgcagacacgctcatcagc
caggagagctgtgggaaaagcgagcctctactaatacctgaagactcagctacagtttta
ggcaaatgtgagccaaccgatattcagcaagccccgcccaacactgactggcgtttctct
caagcccagagacccggcacgagcggatcccaaaatggggatgaaaccggcacctggccc
aacaaccagttcgatacagagatgctgcaagccatgatcttggcctctgccagtgaagcc
gctgatgggagctccactctgggagggggcactggcactatgggtttgagcgctcgatat
ggaccccagtttaccctgcagcacgtgcctgactaccgccagaacgtgtacatccctggc
agcaatgccacactgaccaacgcagctggcaaacgagatggcaaggctccggcaggcggc
aatggcaacaagaagaagtcgggcaagaaagagaagaagtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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