KEGG   Rattus norvegicus (rat): 252917
Entry
252917            CDS       T01003                                 
Symbol
Nr1d1
Name
(RefSeq) nuclear receptor subfamily 1 group D member 1 isoform 1
  KO
K03728  nuclear receptor subfamily 1 group D member 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04710  Circadian rhythm
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04710 Circadian rhythm
    252917 (Nr1d1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    252917 (Nr1d1)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:rno03310]
    252917 (Nr1d1)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys4 thyroid hormone receptor-like
    252917 (Nr1d1)
Nuclear receptors [BR:rno03310]
 1. Thyroid hormone like
  1D. Rev-Erb
   252917 (Nr1d1)
SSDB
Motif
Pfam: zf-C4 Hormone_recep
Other DBs
NCBI-GeneID: 252917
NCBI-ProteinID: NP_001106893
RGD: 628827
Ensembl: ENSRNOG00000009329
UniProt: Q63503
Position
10:complement(84224599..84231812)
AA seq 614 aa
MTTLDSNNNTGGVITYIGSSGSSPSRTSPESLYSDSSNGSFQSLTQGCPTYFPPSPTGSL
TQDPARSFGTVPPSLSDDSSPSSASSSSSSSSSFYNGSPPGSLQVAMEDSSRVSPSKGTS
NITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRI
NRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQNAMNLANNQLSSLCPLETS
PAPHPTSGSVGPSPPPAPAPTPLVGFSQFPQQLTPPRSPSPEPTVEDVISQVARAHREIF
TYAHDKLGTSPGNFNANHASGSPPATTPQCWESQGCPSTPNDNNLLAAQRHNEALNGLRQ
GPSSYPPTWPSGPAHHSCHQPNSNGHRLCPTHVYSAPEGKAPANGLRQGNTKNVLLACPM
NMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVL
MVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLNAMFDFSEKLNSLALTEEELGLF
TAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDLRTLNN
MHSEKLLSFRVDAQ
NT seq 1845 nt   +upstreamnt  +downstreamnt
atgacgaccctagactccaacaacaacacaggtggtgttatcacctacattggctccagc
ggatcctcccccagccggaccagcccagagtccctctatagtgacagctccaatggcagc
ttccagtccctgactcaaggttgtcccacatacttcccaccatcacctactggctccctc
acccaggaccctgcccgctcatttggcactgtgccacccagcctcagtgatgatagctcc
ccttcttctgcttcatcatcatcatcatcttcctcctccttctataatgggagccccccc
ggaagtctacaagtggccatggaagacagcagccgagtgtcccccagcaagggcaccagc
aacattaccaagcttaacggcatggtgctactgtgtaaagtgtgtggggacgtggcctca
ggcttccactatggcgtgcatgcctgcgagggctgcaagggctttttccgccggagcatc
cagcagaacatccagtacaagcggtgtttgaaaaacgagaactgctccattgtccgtatc
aatcgcaaccgctgccagcagtgtcgcttcaagaagtgtctctccgttggcatgtctaga
gacgctgtgcgttttggacgtatccccaagagagagaagcaacgaatgcttgctgagatg
cagaacgccatgaacttggccaacaaccaactgagcagcctgtgccctctagagacctca
cctgccccgcaccccacctcaggctccgtgggcccctcaccacctcctgcaccagccccg
acacctttggtgggcttctctcagttcccacaacagctgacaccacccagatccccgagt
cctgagcccaccgtggaggatgtgatatcccaggtggccagggcccatcgagaaatcttc
acctatgcccatgacaaattaggcacctcacctggcaacttcaatgccaatcatgcatca
ggtagccctccggctaccactccacagtgctgggagagtcagggatgcccgtctaccccc
aacgacaacaaccttttggcggctcagcgtcataatgaagcactgaatggtctacgccag
ggcccctcctcctaccctcctacctggccttctggccctgcccaccacagctgccaccag
cctaacagcaatgggcatcgcctgtgccccacccacgtatactcggccccagaaggcaag
gcacctgccaacggtctacggcaaggcaacaccaagaatgttctgctggcatgtcccatg
aacatgtatccccatggacgtagtggccggactgtgcaggagatctgggaagacttctct
atgagcttcacacccgctgtgcgggaggtggtagaatttgccaaacacatccccggcttc
cgtgacctttctcagcacgaccaggtgaccctgcttaaggctggcacctttgaggtgctg
atggtgcgctttgcgtcattgttcaacgtgaaggaccagacagtcatgttcctgagccgc
acaacctacagcctgcaggagctcggtgccatgggcatgggtgacctgctcaatgccatg
tttgacttcagcgagaagctcaactctctggcgcttactgaggaggagctgggccttttc
acggcagtggtacttgtctctgcagaccgctcgggaatggagaattccgcttcggtggag
cagctccaggagacgctgctgcgggctcttcgggctctggtgctgaagaaccggccctcg
gagacttcccgcttcaccaaactgctgctcaagctgccggacctgcggaccctgaacaac
atgcattccgagaagctgctgtccttccgggtggacgcccagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (10)   
   RefSeq(nuc) (2)   
   GenBank (4)   
   EMBL (4)   
Protein domain (2)   
   Pfam (2)   
All databases (27)   

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