KEGG   Rattus norvegicus (rat): 25383
Entry
25383             CDS       T01003                                 
Symbol
Apobec1
Name
(RefSeq) C->U-editing enzyme APOBEC-1
  KO
K16932  C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    25383 (Apobec1)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.36  mRNA(cytosine6666) deaminase
     25383 (Apobec1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    APOBEC1-ACF complex
     25383 (Apobec1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     25383 (Apobec1)
SSDB
Motif
Pfam: APOBEC4_like APOBEC1 NAD1 SNAD4 APOBEC_N APOBEC2 NAD2 APOBEC4 APOBEC3 APOBEC_C AID dCMP_cyt_deam_1 Toxin-deaminase zf_CopZ
Other DBs
NCBI-GeneID: 25383
NCBI-ProteinID: NP_037039
RGD: 2133
Ensembl: ENSRNOG00000015411
UniProt: P38483 A6ILF2
Position
4:complement(157472879..157500496)
AA seq 229 aa
MSSETGPVAVDPTLRRRIEPHEFEVFFDPRELRKETCLLYEINWGGRHSIWRHTSQNTNK
HVEVNFIEKFTTERYFCPNTRCSITWFLSWSPCGECSRAITEFLSRYPHVTLFIYIARLY
HHADPRNRQGLRDLISSGVTIQIMTEQESGYCWRNFVNYSPSNEAHWPRYPHLWVRLYVL
ELYCIILGLPPCLNILRRKQPQLTFFTIALQSCHYQRLPPHILWATGLK
NT seq 690 nt   +upstreamnt  +downstreamnt
atgagttccgagacaggccctgtagctgttgatcccactctgaggagaagaattgagccc
cacgagtttgaagtcttctttgacccccgggaacttcggaaagagacctgtctgctgtat
gagatcaactggggaggaaggcacagcatctggcgacacacgagccaaaacaccaacaaa
cacgttgaagtcaatttcatagaaaaatttactacagaaagatacttttgtccaaacacc
agatgctccattacctggttcctgtcctggagtccctgtggggagtgctccagggccatt
acagaatttttgagccgatacccccatgtaactctgtttatttatatagcacggctttat
caccacgcagatcctcgaaatcggcaaggactcagggaccttattagcagcggtgttact
atccagatcatgacggagcaagagtctggctactgctggaggaattttgtcaactactcc
ccttcgaatgaagctcattggccaaggtacccccatctgtgggtgaggctgtacgtactg
gaactctactgcatcattttaggacttccaccctgtttaaatattttaagaagaaaacaa
cctcaactcacgtttttcacgattgctcttcaaagctgccattaccaaaggctaccaccc
cacatcctgtgggccacagggttgaaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (11)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (12)   
   RefSeq(nuc) (8)   
   GenBank (2)   
   EMBL (2)   
Protein domain (14)   
   Pfam (14)   
All databases (48)   

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