KEGG   Rattus norvegicus (rat): 25494
Entry
25494             CDS       T01003                                 
Symbol
Nid1
Name
(RefSeq) nidogen-1 precursor
  KO
K06826  nidogen (entactin)
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    25494 (Nid1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04990 Domain-containing proteins not elsewhere classified [BR:rno04990]
    25494 (Nid1)
Domain-containing proteins not elsewhere classified [BR:rno04990]
 EGF-like domain-containing proteins
  cEGF domain-containing proteins
   25494 (Nid1)
SSDB
Motif
Pfam: G2F NIDO EGF_3 Ldl_recept_b Thyroglobulin_1 cEGF EGF EGF_CA FXa_inhibition SGL EGF_MSP1_1 hEGF Plasmod_Pvs28
Other DBs
NCBI-GeneID: 25494
NCBI-ProteinID: NP_001385449
RGD: 3178
Ensembl: ENSRNOG00000002461
Position
17:93069013..93142416
AA seq 1246 aa
MLDASGWSWEMWTWALLQLLLLAGPAGCLSRQELFPFGPGQGDLELEAGDDVVSPSLELI
GELSFYDRSDITSVYVTTNGIIAMSEPPATEFHPGTFPPSFGSVAPFLADLDTTDGLGNV
YYREDLSPFIIQMAAEYVQRGFPEVSFQPTSVVVVTWESMAPYGGPSGSLVEEGKRNTFQ
AVLASSNSSSYAIFLYPDDGLQFFTTFSKKDENQVPAVVGFSKGLEGFLWKSNGAYNIFA
NDRESIENLAKSSNAGHQGVWVFEIGSPATAKGVVPADVNLDVDDDGADYEDEDYDLQTS
HLGLEDVATQPFPSHSPRRGYPDPHNVPRTLAPSYEATERPHGIPTERTKSFQLPVERFP
QKHPQVIDVDEVEETGVVFSYNTGSQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGN
GRQCVAEGSPQRVNGKVKGRIFVGNSQVPVVFENTDLHSYVVMNHGRSYTAISTIPESVG
YSLLPLAPIGGIIGWMFAVEQDGFKNGFSITGGEFTRQAEVTFLGHPGKLILKQQFSGID
EHGHLTINTELEGRVPQIPYGASVHIEPYTELYHYSSSVITSSSTREYTVTEPDQDSAVP
SHTHVYQWRQTITFQECAHDDSRPALPSTQQLSVDSVFVLYNKEERILRYALSNSIGPVR
DGSPDALQNPCYIGTHGCDSNAACRPGPGTQFTCECSVGFRGDGKACYDIDECSEQPSRC
GNHAICNNHPGTFRCECMEGYHFSDRGICVAAVDQRPINYCETGLHNCDIPQRAQCIYMG
GSSYTCSCLPGFSGDGRACQDVDECQHSRCHPDAFCYNTPGSFRCQCKPGYQGDGFRCVP
GEVGKTRCQLEREHILGAAGATDAQRPTLQGMFVPQCDEYGHYTPTQCHHSTGYCWCVDR
DGQELEDTRTPPGMRPPCLSTVAPPIHQGPVVPTAVIPLPPGTHLLFAQTGKIERLPLER
NTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG
SPEGIALDHLGRTIFWTDSHLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDSVRGNLYWT
DWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP
SRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAVSKEMDAFHPHKHTRLYGITIA
LSQCPQGHNYCSVNNGGCTHLCLPTPGSRTCRCPDNTLGVDCIERK
NT seq 3741 nt   +upstreamnt  +downstreamnt
atgctggacgcgagcggctggagttgggagatgtggacgtgggcgctgctgcagttgctg
ctgctggcggggccggcaggctgtctgagccgccaggagcttttccccttcggccctggg
cagggggacctagagctggaggccggggacgacgtggtgtccccctccctggaactgatc
ggagaactgagcttctatgatcgttcggacatcacgtcggtctatgtcaccacaaatggg
atcatcgccatgagcgagcccccagccacagaattccatcctggaaccttcccacccagc
ttcggctcagtagcacctttcctggctgacttggacacaacagatggcctggggaatgtg
tattatcgagaagacttatctcccttcattattcagatggcagcagagtatgtccagaga
ggcttcccagaggtctctttccagcccactagtgtggtggttgtcacttgggaatccatg
gctccctatggagggcccagtgggagccttgttgaggaaggcaagagaaacacgttccag
gctgttctggcctcctcaaattccagctcctatgctattttcctttatcctgatgatggt
ctacagttctttacaacattctcgaagaaggatgaaaaccaagtacctgccgtggttggc
ttcagcaaaggtctagaaggatttctatggaagagcaatggagcctataacatatttgcc
aatgacagggaatcaattgaaaatttggccaagagcagcaacgctgggcaccagggtgtg
tgggtgtttgagattggaagtcctgctactgccaagggggtggtgcctgcagatgtgaac
ctggacgtggatgatgatggagcagactatgaggatgaagattatgacctacaaacctct
catctcggcctggaggatgtggccacccaacccttcccctcccatagtccaagaagggga
taccctgatccacacaatgtacctaggaccctagctcctagctacgaggctacagagaga
ccccatggaatccctactgagaggaccaaatctttccagctgccagtggagagattcccc
cagaagcacccccaggtcattgatgtggatgaagtagaggaaacaggagttgtattcagc
tacaacacaggttcccagcagacgtgtgccaacaatagacaccagtgctctgtgcatgca
gagtgcagagactacgctactggcttctgctgcaggtgtgtggccaactacacgggcaat
ggcaggcagtgcgtggcagaaggctctccacagcgggtcaacggcaaggtgaagggaagg
atcttcgtggggaacagccaggtccccgtggtgtttgagaacactgacctacactcctat
gtggtgatgaaccacggacgctcttacacagccatcagtaccatccctgaaagtgtcggg
tattccctgcttcccctggcacccattggaggcatcatcggatggatgtttgcagtggag
caggatgggttcaagaatgggtttagcatcacagggggtgagttcaccagacaagctgag
gtgaccttcttggggcacccaggcaagctgatcctgaagcagcagtttagtggtattgat
gaacatggacacctgaccatcaacacggagctagaaggccgagtgccacagattccctat
ggtgcctcagtgcatattgagccctacactgagctgtaccactactccagctcagtgatc
acttcctcctccacccgggagtacacggtgactgagcctgatcaggacagtgccgtgccc
tcacacacccatgtttaccagtggcgtcagactatcaccttccaggagtgtgcccacgat
gactccaggccagccctgcccagcacccagcagctctctgtggatagtgtgtttgtcctg
tacaacaaggaggagaggatcttgcgctatgccctcagcaactccatcgggcctgtgagg
gatggctcccctgatgcccttcagaatccatgctacatcggcacccatgggtgtgacagc
aatgcagcctgtcgccctggccctggaacacagttcacctgtgaatgctctgtcggcttc
cgaggagacgggaaggcttgctacgatattgatgaatgttcagagcagccttcccggtgt
gggaaccatgcaatctgcaacaaccacccagggaccttccgctgtgagtgcatggagggc
taccacttctcagacaggggaatatgtgtggctgctgtggaccaacgtcccatcaactac
tgtgaaactggtctccacaactgtgatatccctcagcgagcccagtgcatctatatgggt
ggctcctcctacacctgttcctgtctgcctggcttctctggggatggcagagcctgccaa
gatgtggatgaatgccagcacagccgatgtcaccctgatgccttctgctacaacacacca
ggctccttcagatgtcagtgcaaacctggctatcagggggatggcttccgatgtgtgcct
ggagaggtgggcaaaacccggtgtcaactggaacgagagcacatccttggagcagccggg
gcaacagatgcacagcggcccacactgcaggggatgtttgtaccccagtgtgatgaatat
gggcactatacacccacccagtgccaccacagcactggctactgctggtgtgtggaccga
gatggtcaggagctagaggatacccgtactccaccagggatgaggcccccatgtctcagt
acagtggcgcctcctattcaccagggaccagtagtacccacagctgtcatccccttacct
ccagggacacacttactctttgctcagactgggaagattgagcgcctgcccctggaaaga
aacaccatgaagaagacagaagccaaggcctttctccatatccctgcaaaagtcatcatt
ggtttggcctttgactgcgtggacaaggtggtttactggacagacatcagcgagccttcc
attgggagagccagcctacacggtggagagccaaccaccatcattcgacaagatcttgga
agccctgaaggcatcgctcttgaccatcttggccgaactatcttctggacggactctcac
ctggatcgaatagaagttgcaaagatggatggcacccagcgccgagtgctgtttgacacg
ggtttggtgaatcccagaggcattgtgacagactctgtacgagggaacctttattggaca
gattggaacagagataatcccaaaattgagacttctcacatggatggcaccaaccggagg
attctcgcacaggacaacctgggcttgcccaatggtctgacctttgatgcgttctcatct
cagctctgctgggtggatgcaggcacccatagggcagaatgcctgaacccagctcaaccc
agcagacgtaaggttctcgaagggctccagtatcctttcgccgtgacgagctatgggaag
aatttgtactatacagattggaagacgaactcggtgattgccatggaccttgctgtatcc
aaagagatggatgccttccacccacataagcatacccggctctatggaatcaccattgcc
ctgtcccagtgtccccaaggccacaattactgctcagtgaataatggtggctgtacccac
ctctgcttgccaactccagggagcaggacctgccgatgtcctgacaacaccttgggagtt
gactgcattgaacggaaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (13)   
   Pfam (13)   
All databases (31)   

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