KEGG   Rattus norvegicus (rat): 25567
Entry
25567             CDS       T01003                                 
Symbol
Tnr
Name
(RefSeq) tenascin-R precursor
  KO
K06252  tenascin
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04151  PI3K-Akt signaling pathway
rno04510  Focal adhesion
rno04512  ECM-receptor interaction
rno05165  Human papillomavirus infection
rno05206  MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    25567 (Tnr)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    25567 (Tnr)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    25567 (Tnr)
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    25567 (Tnr)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    25567 (Tnr)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:rno00536]
    25567 (Tnr)
Glycosaminoglycan binding proteins [BR:rno00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   25567 (Tnr)
SSDB
Motif
Pfam: fn3 Fibrinogen_C EGF_Tenascin Pur_ac_phosph_N EGF_2 Lzipper-MIP1 EGF
Other DBs
NCBI-GeneID: 25567
NCBI-ProteinID: NP_037177
RGD: 3886
Ensembl: ENSRNOG00000002468
Vega: OTTRNOG00000000165
UniProt: Q05546
Structure
Position
13:74285141..74706174
AA seq 1358 aa
MGIEGETVVLKNMLIGVNLILLGSMLKPSECRLEVTTERVQRQTVEEEGGASSYNTSSKE
QPMVFNHVYNINVPLESLCSSGLEASAEQDVSAEDDTLAEYTGQTSDHESQVTFTHKINL
PKKACPCASSAQVLQELLSRIEMLEREVSVLRDQCNTNCCQESAATGQLDYVPHCSGHGN
FSFESCGCICNEGWFGKNCSEPYCPLGCSSRGVCVDGQCICDSEYSGDDCSELRCPTDCS
SRGLCVDGECVCEEPYTGEDCRELRCPGDCSGKGQCANGTCLCQEGYAGEDCSQRRCLNA
CSGRGHCQEGLCICEEGYQGPDCSAVTPPEDLRVAGISDRSIELEWDGPMAVTEYVISYQ
PTALGGLQLQQRVPGDWSGVTITELEPGLTYNISVYAVISNILSLPITAKVATHLSTPQG
LQFKTITETTVEVQWEPFSFSFDGWEISFTPKNNEGGVIAQLPSDVTSFNQTGLKPGEEY
IVNVVALKEQARSPPTSASVSTVIDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGL
VGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNL
RVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGT
EYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISLIWTKASGPIDHYRITF
TPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVDAFTGFRPISHL
HFSHVTSSSVNITWSDPSPPADRLILNYSPRDEEEEMMEVLLDATKRHAVLMGLQPATEY
IVNLVAVHGTVTSEPIVGSITTGIDPPKNITISNVTKDSLTVSWSPPVAPFDYYRVSYRP
TQVGRLDSSVVPNTVTEFTITRLYPATEYEISLNSVRGREESERICTLVHTAMDSPMDLI
ATNITPTEALLQWKAPMGEVENYVIVLTHFAMAGETILVDGVSEEFQLVDLLPRTHYTVT
MYATSGPLVSGTIATNFSTLLDPPANLTASEVTRQSALISWQPPRAAIENYVLTYKSTDG
SRKELIVDAEDTWIRLEGLSENTDYTVLLQAAQEATRSSLTSTIFTTGGRVFSHPQDCAQ
HLMNGDTLSGVYTIFLNGELSHKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVG
FGNLEDEFWLGLDNIHRITAQGRYELRVDMRDGQEAVFAYYDKFAVEDSRSLYKLRIGGY
NGTAGDSLSYHQGRPFSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQG
INWYHWKGHEFSIPFVEMKMRPYIHRLTAGRKRRALKF
NT seq 4077 nt   +upstreamnt  +downstreamnt
atggggatcgaaggggaaacagtagtcttgaagaacatgctcattggtgtaaacctgatc
ctgttgggatccatgctcaagccttctgaatgccggctggaagtgactacagaaagggtc
cagagacaaactgtggaggaggaaggaggggcttccagctacaacacatccagcaaggaa
cagcctatggtctttaaccatgtgtataacatcaacgtgccactcgaaagcctctgctcc
tcggggctggaggcctcagctgagcaggacgtgagtgccgaagatgatactctggcagaa
tacacaggccaaacctcagaccatgaaagccaggtcaccttcacccacaagatcaacctc
cccaaaaaagcctgcccatgtgcaagctctgcccaggtactgcaggaactgttgagccga
atcgagatgctggagagggaggtgtcagtgctgcgagaccagtgcaacaccaactgctgt
caggaaagtgctgccacaggacaactggactatgtccctcactgcagcggccatggcaac
tttagcttcgagtcctgtggctgcatctgcaatgaaggctggtttggcaagaactgctca
gagccctactgcccattgggctgctccagtcggggtgtatgtgtcgatggccagtgcatt
tgtgacagtgaatacagcggagatgactgttcagagctccggtgcccaacagactgcagt
tcccgagggctctgtgtggatggggaatgtgtctgtgaagagccctacacaggcgaggac
tgcagggagctgcgttgccctggggactgttcagggaaggggcaatgtgccaatggtacc
tgcctgtgccaagagggctatgctggtgaggactgcagtcagcgacggtgtctgaatgct
tgcagtgggcgaggtcactgccaggaggggctctgcatctgtgaggagggctaccagggc
cctgactgctcagcagttacccctccagaggacttgcgagtggctggtatcagcgacagg
tccattgagctggaatgggacgggccgatggcagtgacggaatatgtgatctcttaccag
ccgacggccctggggggccttcagctccagcagcgggtgcctggagattggagtggtgtc
accatcacggagctggagccaggtctcacctacaacatcagcgtctacgctgtcattagc
aacatcctcagccttcccatcactgccaaggtggccactcatctttctactcctcaaggg
ctacagttcaagacgatcacagagaccaccgtggaagtgcagtgggagcccttctctttc
tccttcgatgggtgggagatcagcttcactccaaagaacaatgaaggaggggtgatagct
cagctccccagcgatgttacgtcctttaaccaaacgggactgaaacctggggaggagtac
attgtgaatgttgtagcactaaaggaacaagcccggagccctccgacctctgccagcgtc
tccactgtcattgacgggcccacacagatcctggttcgagatgtctctgatactgtggcc
tttgtggaatggaccccacctcgagccaaagttgatttcattctattaaaatatggcttg
gtgggtggcgaaggtgggaagactaccttccggctgcagcctccccttagccagtactca
gtgcaagcccttagacctggctcccgctacgaggtgtccatcagcgcagtccgggggacc
aatgaaagtgatgcctcaagcacccagtttacaacagaaattgatgctcccaagaatttg
cgagtgggttcccggacagcaactagccttgacctcgaatgggataacagcgaggctgaa
gctcaggagtacaaggttgtgtacagcaccctagccggggagcagtaccatgaagtgctg
gtacccaaaggcattggtccaactaccaagactaccctcacagatctggttccaggcaca
gaatatggagttggaatatctgcggtaatgaactcgaaacaaagcattcccgctaccatg
aatgccaggactgagcttgacagtccccgagacctcatggtaacagcctcctcagagacc
tctatctctctcatctggacgaaggccagtggtcctattgatcactatcgaattactttt
actccatcttctgggatctcctcagaagtcactgtgcctagggataggacttcatataca
ctgacagatctagagcctggagcagaatacatcatctccattactgctgagaggggtcgg
cagcagagcctggagtctactgtggatgccttcacaggcttccgccctatctcccacttg
cacttttctcatgtgacctcctccagtgtcaacatcacctggagtgacccatctccccca
gcagacagactcattctgaactacagccccagggatgaagaggaggagatgatggaggtt
ctcttggatgccaccaagaggcacgccgtcctaatgggtctacagccagccactgaatat
atagtgaatctcgtagctgtccatgggacagtaacctctgaacccatagtgggttctatc
actacaggaattgatcctcccaaaaacatcacaattagcaacgtgactaaggactccctg
acagtttcctggagccctcctgttgcgccttttgattactaccgagtatcctatcgaccc
acccaagtgggacggctggacagctctgtcgtgcccaacactgtgacagagttcacaatc
accaggctctatccagctactgaatatgaaataagcctcaacagtgtacgcggcagggag
gagagtgaacgcatctgcaccctggtgcacacagccatggatagccccatggatctaatt
gctaccaacatcacgccaacagaagccctgctccagtggaaggcacccatgggtgaagtg
gaaaattatgtcattgtcctcacccactttgccatggctggagagaccatcctggttgat
ggggtcagtgaagaattccagcttgtagacctgcttcctaggacccactacactgtcacc
atgtatgctaccagtggacctctcgtgagtggcaccatcgccaccaacttctccaccctc
ctggaccctcccgccaacctgacagccagtgaagtcaccaggcaaagcgcactgatctcc
tggcagccacccagagctgcgattgaaaactatgtcttgacatacaagtccaccgatgga
agccgcaaggagctgattgtggatgctgaggacacctggatccgactggagggcctgtcg
gagaacacagactacacagtgctcctgcaggcagctcaggaggccacaaggagcagcctc
acctctactatctttaccacagggggccgggtgttctctcatcctcaagactgtgcccag
cacttgatgaatggagacactctgagtggagtttacaccatcttcctcaatggggagtta
agccacaagttgcaagtatactgcgatatgaccacagatgggggcggctggattgttttc
cagagacggcaaaatggccaaactgattttttccggaaatgggcagattaccgtgttggc
tttgggaatctggaggatgagttttggctagggctagacaacatccacaggataacagcc
cagggccgctatgagctgcgtgtggatatgcgggatggacaggaggccgtctttgcctac
tatgacaagttcgctgtggaggacagcagaagcctgtacaagctccgtataggaggctac
aatggcactgcaggagactcccttagctatcaccagggacgtcctttctccactgaggac
agagacaatgatgttgcagtcaccaactgtgccatgtcatacaagggtgcttggtggtat
aagaactgccaccggaccaacctcaacgggaagtatggggagtccaggcacagtcagggg
atcaactggtaccattggaaaggccatgaattctccatcccctttgtagaaatgaagatg
aggccctacatccatcgtctcacagccgggaggaaacggcgagccttgaaattctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (12)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (10)   
DNA sequence (16)   
   RefSeq(nuc) (10)   
   GenBank (3)   
   EMBL (3)   
3D Structure (1)   
   PDB (1)   
Protein domain (7)   
   Pfam (7)   
All databases (51)   

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