KEGG   Rattus norvegicus (rat): 25581
Entry
25581             CDS       T01003                                 
Symbol
Psmc2
Name
(RefSeq) 26S proteasome regulatory subunit 7
  KO
K03061  26S proteasome regulatory subunit T1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03050  Proteasome
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05017  Spinocerebellar ataxia
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05169  Epstein-Barr virus infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    25581 (Psmc2)
 09160 Human Diseases
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    25581 (Psmc2)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    25581 (Psmc2)
   05012 Parkinson disease
    25581 (Psmc2)
   05014 Amyotrophic lateral sclerosis
    25581 (Psmc2)
   05016 Huntington disease
    25581 (Psmc2)
   05017 Spinocerebellar ataxia
    25581 (Psmc2)
   05020 Prion disease
    25581 (Psmc2)
   05022 Pathways of neurodegeneration - multiple diseases
    25581 (Psmc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:rno03051]
    25581 (Psmc2)
Proteasome [BR:rno03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    ATPase subunits
     25581 (Psmc2)
SSDB
Motif
Pfam: AAA PRS7_OB AAA_lid_3 AAA_22 AAA_5 AAA_2 AAA_16 nSTAND3 AAA_28 AAA_7 AAA_18 AAA_14 RuvB_N Sigma54_activ_2 Prot_ATP_ID_OB_C DUF815 TIP49 Mg_chelatase AAA_33 AAA_24 RNA_helicase IstB_IS21
Other DBs
NCBI-GeneID: 25581
NCBI-ProteinID: NP_150239
RGD: 3428
Ensembl: ENSRNOG00000012026
UniProt: Q63347
Structure
Position
4:complement(14148080..14162390)
AA seq 433 aa
MPDYLGADQRKTKEDEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKIN
ELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAK
FVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGC
KEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV
IGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTML
ELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHAR
SMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSY
AKFSATPRYMTYN
NT seq 1302 nt   +upstreamnt  +downstreamnt
atgccggattacctaggtgcagaccagcggaaaaccaaagaggatgagaaggacgacaag
cccatccgagctctggatgaaggggatatcgccttgttgaaaacttatggccagagtact
tattcgaggcagatcaagcaggttgaagatgacattcagcaacttctcaaaaaaattaat
gagctcactggtatcaaagagtccgacactgggctggcccctccagccctctgggatttg
gctgcagacaaacagacacttcagagtgaacagccgctacaggttgcaagatgtaccaag
ataatcaacgccgattcggaggacccgaaatacatcatcaacgtgaagcagtttgccaag
ttcgtggtggatctcagtgatcaggtggcacctactgacattgaggaagggatgagagtc
ggcgtggacagaaataaataccaaattcacattccactgcctcctaagattgacccaaca
gttaccatgatgcaggtggaggaaaaacctgatgtcacatacagtgacgttggcggctgt
aaggaacagattgagaaattgcgggaagtggttgaaacccctctactccatccagagagg
tttgttaaccttggaatcgagcctccgaagggtgtgttgttatttgggccaccaggcaca
ggcaagaccctctgtgccagggcagtggccaatcggactgatgcttgcttcatccgagtt
atcgggtctgagcttgtacagaagtacgtcggtgagggggctcgaatggttcgggagctt
tttgaaatggccaggacaaaaaaagcctgccttattttctttgatgaaattgatgccatt
ggaggggctcggtttgacgatggcgctgggggtgacaatgaggtgcagaggaccatgttg
gagctcatcaatcagctggatggctttgatcctcggggcaacatcaaagtgctcatggcc
actaaccgacctgatactctggacccagcgctgatgaggccagggaggctggacagaaag
attgagttcagcttacctgacttagagggtcgaacgcacatctttaagattcatgctcgc
tcaatgagtgtggaaagagacatccgatttgagctactagcccgcctgtgtccaaacagt
actggagcggagattagaagcgtttgcacagaggctggtatgtttgcaatccgagcccgg
agaaagattgctacagagaaggacttcttagaagctgtaaataaggtcatcaagtcgtat
gccaaatttagtgctactccccgctacatgacatacaactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (9)   
   KEGG PATHWAY (9)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (25)   
   RefSeq(nuc) (1)   
   GenBank (12)   
   EMBL (12)   
3D Structure (4)   
   PDB (4)   
Protein domain (22)   
   Pfam (22)   
All databases (72)   

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