KEGG   Rattus norvegicus (rat): 25654
Entry
25654             CDS       T01003                                 
Symbol
Col11a1
Name
(RefSeq) collagen alpha-1(XI) chain precursor
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04820  Cytoskeleton in muscle cells
rno04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    25654 (Col11a1)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    25654 (Col11a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:rno00536]
    25654 (Col11a1)
Glycosaminoglycan binding proteins [BR:rno00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   25654 (Col11a1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1
Other DBs
NCBI-GeneID: 25654
NCBI-ProteinID: NP_037249
RGD: 2372
Ensembl: ENSRNOG00000023148
UniProt: P20909
Position
2:204509136..204702264
AA seq 1804 aa
MEPWSRWKTKRWIWDLTISTLVLTFLFQAREVRGAAPVDILKALDFHNSPVGISKTTGFC
TSRKNSKDPDIAYRVTEEAQISAPTKQLFPGGIFPQDFSILFTIKPKKGTQAFLLSLYNE
HGIQQLGVEVGRSPVFLFEDHTGKPTPENYPLFSTVNIADGKWHRVAISVEKKTVTMIVD
CKKKITKPLDRSERSIVDTNGIMVFGTRILETDVFQGDIQQFLITGDPKAAYDYCDHYSP
DCDLTSKAAQAQEPHIDEYAPEDIIEYDYEYGETDYKEAESVTEMPTVTEETVAQTEANI
VDDFQDYNYGTMETYQTESPRRVSGSNEPNPVEEGFTEEYLTGEDYDVQRNISEDILYGN
KGIDGRDSDLLVDGDLGEYDFYEYKEYEERTTTSPNEEFGPGVPAETDFTETSINGHGAY
GEKGQKGEPAVVEPGMLVEGPPGPAGPAGLMGPPGLQGPSGLPGDPGDRGPPGRPGLPGA
DGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGP
VGGPGSAGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGSKGDRGF
DGLPGLPGDKGHRGERGPQGPPGLPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGP
PGQPGIGGIDGPQGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGL
AGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGE
DGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGL
PGYPGRQGPKGSTGFPGFPGANGEKGARGIAGKPGPRGQRGPTGPRGSRGARGPTGKPGP
KGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPAGKDGLPGHPGQRGETGFQGKTGP
PGPGGVVGPQGPTGETGPIGERGHPGTPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGP
AGIRGFPGERGLPGAQGAPGLKGGEGPQGPQGPIGSPGERGSAGTAGPIGLPGRPGPQGP
PGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGD
KGENGPPGPPGLQGPVGAPGIAGGDGEAGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGL
PGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGN
PGPPGEAGSGGPKGERGEKGEAGPPGAAGPPGIKGPPGDDGPKGNPGPVGFPGDPGPPGE
PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGASGSEGRQGEKGAKGE
AGAEGPPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPGL
KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPPGP
PGLPGPAGPKGNKGSSGPTGQKGDSGMPGPPGPPGPPGEVIQPLPILSPKKTRRHTESIQ
ADAGDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEY
WIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRLSSWPKEKPGSWYSEFKRGKLLS
YLDVEGNSINMVQMTFLKLLTASARQNFTYNCHQSTAWYDVLSGSYDKALRFLGSNDEEM
SYENNPHIKALYDGCASRKGYEKTVIEINTPKIDQVPIIDVMINDFGDQNQKFGFEVGPA
CFLG
NT seq 5415 nt   +upstreamnt  +downstreamnt
atggagccctggtccaggtggaaaacgaaacggtggatctgggatctcaccatctcaacc
ctcgtcttgacttttctcttccaagccagagaggtcagaggagctgctccagttgatata
ctgaaagcattagattttcacaattctccagtgggaatatctaaaacaacaggattttgc
acaagcagaaagaattctaaagatccagatatcgcttatagagttaccgaggaagcccag
atcagtgccccaacgaagcagttatttccaggaggaatttttccgcaagatttttcaata
ctatttacaataaaacccaaaaaaggaactcaagctttcctcttgtctctctacaatgaa
catggcattcagcaactcggtgttgaggttgggagatcacctgtttttctatttgaagac
cacactggaaaacccacaccagaaaactatcctctcttctcaacagttaacattgctgat
ggaaagtggcaccgggtagcaatcagtgtggagaagaaaactgtgacaatgattgtcgat
tgtaagaagaaaatcacaaaacccctcgatagaagcgagagatcgatagtcgataccaac
ggaatcatggtatttggaacaagaattttagaaacagatgttttccagggtgatattcag
cagttcctgatcactggtgaccccaaggcagcatatgactactgtgaccattacagtccc
gactgtgacttaacatccaaggccgctcaggcccaggagccgcacatagatgagtatgca
cctgaggatataatcgagtatgactatgaatatggggagacagactataaagaggctgag
agtgtaacagagatgcccactgtcactgaagaaacagtagcacaaactgaggcaaatatt
gtggatgactttcaagactataactatggaacgatggaaacttaccagactgagtctcct
cggcgggtatcaggatcaaatgagccaaatccagttgaagaaggttttactgaagaatat
ctaaccggagaggattatgatgtccagagaaacatttccgaggatattctgtatggaaac
aaaggaatagacggcagggattctgatctgctggtagatggagatttaggtgaatatgat
ttttatgaatacaaagaatatgaagaaaggactacgacctcccctaatgaagaatttggc
ccaggtgtcccagcagaaactgatttcacagaaacaagcatcaatggccatggcgcatat
ggagagaaagggcagaagggggaacctgctgtagttgaacccggaatgcttgttgaagga
ccacctgggccagctggaccagcgggtcttatgggtcctccaggactacaaggtccttct
gggctccccggcgaccctggtgataggggcccaccaggacgccctggcttaccaggggct
gatggcttacccggtcctccaggaaccatgttaatgttaccattccgctatgggggtgac
ggctccaaaggaccaaccatctctgcgcaggaagcccaggctcaggcgattcttcagcag
gctcggattgctctgagaggccctcctggcccaatgggtcttaccggaagaccaggtcct
gtggggggtcctggttcagctggagccaaaggtgagagtggggatccaggtcctcagggt
cctcgaggtgtccaaggtcctcctggtccaaccggaaaacctggaaagaggggccgtcca
ggtgccgatggaggaagaggcatgccaggagaacctgggtctaagggagaccgagggttt
gatggacttccaggtctgccaggtgacaaaggtcacaggggggaaagaggtccacaaggt
ccacctggcctccccggcgatgatggaatgaggggagaagatggagagatcgggcccagg
ggtcttccaggggaagctggtccacgaggcttgctgggaccaaggggcactccaggacct
cctgggcagcctggtattggaggtatagatggcccccaaggaccaaaaggaaacatgggt
cctcaaggggagcctggaccaccaggtcagcaaggaaatccaggacctcaaggacttcct
ggtccacaaggcccaattggtcctcctggagaaaaaggaccacaaggaaaaccagggctt
gcaggacttcctggtgccgatggacctcctggtcatcctgggaaagaaggccagtctgga
gaaaagggtgccctgggtcctcctggtcctcagggacctattggctatcccggtccccgt
ggagtaaagggagcagatggtgtcagaggtctcaagggctctaaaggagaaaagggtgaa
gatggctttccaggattcaaaggtgacatgggtcttaaaggtgacagaggcgaagtgggt
caagttggtccaagaggagaagatggccctgaaggccccaaaggccgtgcaggcccaact
ggagacccaggtccctctggccaagcaggagagaagggaaaacttggggttccaggattg
ccaggatatccaggaagacaaggtccaaagggatccactggatttcctggatttccaggt
gccaacggggagaaaggtgcccggggaattgctggcaaaccaggcccccgaggacaacgt
ggtccaacgggtcctcgaggttccagaggcgccagaggtcccacaggaaaacctgggccg
aagggtacatcaggtggtgatggccctcctggcccaccaggcgaaaggggccctcaagga
cctcaaggtccagttggattccctggaccaaaaggcccccctggccctgctgggaaagat
gggctaccaggacaccctggacaacgtggagagactggatttcaaggaaagaccggtccc
cctgggccaggaggtgtggtaggaccacagggaccaactggtgagactggcccgataggt
gaacgtgggcatcctggcactcctggtcctccgggcgagcaaggacttcctggtgctgca
gggaaagaaggtgcaaagggtgatcctggtcctcaaggtatctcagggaaagatggacca
gcaggaatccgtggtttcccaggtgaaagaggccttcctggagcccagggcgcacctggg
ttgaaaggaggagaaggtccccaaggcccgcagggtccaattggctctcctggagagcga
ggctctgcaggcacagcaggcccaattggtttgccaggacgtccaggccctcagggccct
cctggtccagctggagaaaaaggtgctccgggagaaaagggtcctcaggggcctgcaggt
agagatggggtccaaggccctgtgggtctcccagggcctgctggtcctgctggctctcct
ggagaagatggagacaagggtgaaattggtgaaccaggccaaaagggcagcaaaggtgac
aaaggcgaaaatggtcctcctggtcccccgggtcttcaaggccctgttggtgctcctgga
attgctggaggagatggtgaggcaggtccccgaggacagcagggaatgtttggacaaaaa
ggtgatgagggtgcacgaggtttcccaggacctcctgggcccataggtcttcaggggttg
ccaggcccaccaggtgaaaagggcgaaaacggagacgttggccctatgggtccaccaggt
cctcctggcccacgaggccctcaaggtcccaatggagctgatggaccacaaggaccccca
ggctctattggttcagttggtggtgtgggagaaaagggtgaaccaggagaagcagggaac
ccaggaccccctggagaagccggatcaggtggtcccaaaggagagagaggagagaaagga
gaagctgggccccctggtgctgcgggtcctcctggtattaaggggccaccaggtgatgat
ggacccaaggggaatccgggacctgttgggtttcctggagatcctggtccacctggagaa
cctggtcctgcagggcaagatggtgttggaggtgacaagggtgaagatggagatccagga
caaccaggtccccctggtccatccggtgaagctggccctccaggtccacctggaaagaga
ggtccgcctggagcttccggttccgaaggaaggcaaggagagaaaggtgctaagggagaa
gctggagctgaaggacctcctgggaaaactggcccggtcggacctcagggtccttctgga
aagcctggtccagaaggtcttcgaggcatccctggtcctgtgggagaacaaggtctcccc
ggtgctgctggccaagatggaccccctggtcctctgggacctcctggtttacctggtctc
aaaggtgatcctggctccaagggtgaaaagggacatcctggtttaattggattgattggc
cctccaggagaacaaggggaaaagggtgacagaggacttcctgggactcaaggttctcca
ggagccaaaggtgatgggggcatcccaggtcctgctggtcccataggtcctcctggtcct
ccaggattaccaggtcctgctggtccgaagggtaacaaaggatcttctggacctactggc
cagaagggtgacagtggtatgccaggacctcctgggcctccaggtcctcctggagaagtc
atacagccattacctattttgtcaccgaagaaaacaagaagacacactgaaagcatccag
gccgacgcaggtgataatattcttgactactcagatggcatggaggaaatatttggttcc
ctcaattctctgaaacaagacattgaacacatgaagtttcccatgggtacacagaccaac
ccagcacgaacatgcaaagacctgcagctcagccaccccgacttcccagatggtgaatat
tggattgatcctaaccaaggctgctcaggtgattccttcaaagtttactgtaatttcaca
gctggtggtgagacgtgcatctatccagacaaaaaatctgagggagtaagactttcatct
tggccgaaggagaaaccaggaagttggtacagtgaatttaagagaggaaaactgctttcc
tatttagatgtggaaggcaattccatcaatatggtacaaatgacattcctgaaactcctg
actgcctctgccagacaaaacttcacctacaattgccaccagtcaactgcttggtatgac
gtcttatcaggaagttatgacaaagcacttcggtttctgggatctaatgatgaggaaatg
tcctacgagaacaacccacacatcaaagctttgtatgacggctgtgcgtcccgaaaaggc
tatgaaaagacagtgattgagatcaatactccgaaaattgatcaagtacccatcattgat
gtaatgatcaatgattttggtgatcagaatcagaagtttggatttgaagttggtccagct
tgctttcttggctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (8)   
   RefSeq(nuc) (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (29)   

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