KEGG   Rattus norvegicus (rat): 25681
Entry
25681             CDS       T01003                                 
Symbol
Col10a1
Name
(RefSeq) collagen alpha-1(X) chain precursor
  KO
K19479  collagen type X alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    25681 (Col10a1)
SSDB
Motif
Pfam: Collagen C1q BclA_C
Other DBs
NCBI-GeneID: 25681
NCBI-ProteinID: NP_037272
RGD: 2371
Ensembl: ENSRNOG00000051399
Position
20:39737536..39744518
AA seq 680 aa
MLPQIPFLLLVSLTLVHGTFYAERYQTPTGVKSALASPRTQYFIPYPIKGKEISVRGEQG
IPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGISATGKPGLPGKPGERGPH
GHKGDIGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGLTGAPGSRGFPGEKGAPGAPG
VNGQKGETGYGTPGRPGERGLPGPQGPVGPPGSPGVGRRGENGFPGQPGIKGDRGFPGEA
GPPGPPGPQGPPGKQGREGIGKPGATGSPGRPGIPGEKGHPGAPGIAGPPGAPGFGKQGL
PGLRGQRGPAGLPGAPGAKGEQGPAGHPGEPGLTGSPGNMGPQGPKGIPGNHGIPGTKGE
TGLVGPAGPPGARGARGPPGLDGKTGYPGDPGLNGPKGNPGLPGPKGDPGVGGAPGLRGL
VGPTGPKGVPGHNGEAGPRGEPGIPGTRGPIGPPGIPGFPGSKGDPGKPGAPGPAGIVTK
GLNGPAGPPGRPGPRGHTGEPGLPGPPGPPGPPGPPSQAVIPDGFTKSGQRPRLSGMPLV
SANQGVTGMPVSAFTVILSKAYPAVGAPIPFDEILYNRQQHYDPRSGIFTCKIPGIYYFS
YHIHVKGTHVWVGLYKNGTPTMYTYDEYSKGYLDQASGSAIMELTENDQVWLQLPNAESN
GLYSSEYVHSSFSGFLVAPI
NT seq 2043 nt   +upstreamnt  +downstreamnt
atgctgccacaaataccctttctgctgctagtgtccttgacgctggttcatggaacgttt
tatgctgagcggtaccaaactcccacaggtgtgaagagcgcacttgccagccccaggaca
caatacttcatcccataccctataaagggtaaagagatttcagtaagaggagaacaaggc
attcctggtccaccaggcccagctggacctcgaggacacccaggtccctcaggacctcca
ggaaagccaggctatggaagtcctggactccaaggagagccagggttgccaggaccacca
ggaatatcagccactgggaagccgggcctgccaggcaaaccaggggagagaggaccacat
ggacacaaaggagatattggcccagctggcttaccagggcctcggggccctccaggccca
cccggaatccctggtccagctggaatttctgtgccaggaaaacccggacagcagggactt
acaggtgctccaggatctaggggctttcctggagaaaagggggcaccaggagctcctggt
gtgaatggacagaaaggggaaaccggatatggcactcctggccgtccaggtgagaggggt
cttccaggccctcagggtcctgtaggcccccctggctcccctggagtgggaagaagaggt
gaaaatggctttccgggacagcctggcataaaaggtgaccggggtttcccaggagaagcg
ggaccacccggtccaccaggtccacaaggtcctcctgggaagcaaggacgagaaggtatt
gggaagccaggagccactggatcccccggtcggccaggtatcccaggagaaaaaggccac
ccaggggctccaggaatagctgggcctccaggagctcctggctttggaaaacaaggcttg
ccaggtttgaggggacaaaggggacctgctggtcttcctggggctccaggtgccaaaggg
gaacaagggccagcaggtcatcctggtgaaccaggtctgactggatcccctgggaatatg
ggaccccaaggacctaaaggaatcccagggaatcatggtatcccaggcactaaaggtgag
acaggtctggtggggcctgcagggccacccggggctagaggagcaaggggcccccctggg
ttagatggaaaaacaggatatcctggggatccaggtctcaatggtcctaagggtaaccca
gggttaccaggaccaaaaggtgatcctggagtgggaggagcccctggtcttcgaggtctt
gttggccctacaggacctaaaggagtgcctggacacaatggtgaggcaggtccaagaggt
gaacctggaataccaggtaccaggggccctattggaccaccaggtatcccaggattccct
ggatctaagggtgacccaggaaagccaggtgctccgggcccagctggaatagtaactaag
ggcctcaatgggcccgctggtcctccagggcgtcctggtccaagaggtcatactggagag
cctggtctcccaggtcctccaggacccccaggacctccaggacctcccagccaagcagtc
atacctgatggcttcacaaagagcggacagagacccaggctttctgggatgcctcttgtc
agtgctaaccagggggtaacaggcatgccggtgtccgcttttactgtgattctttccaaa
gcttacccagcggtaggtgctcccatcccatttgatgagattctgtacaacaggcagcag
cactatgacccaagatctggaatctttacctgtaagatcccaggcatatactatttttcc
tatcacatccatgtgaaggggactcacgtttgggtaggcctgtataagaatggcacgccc
acaatgtacacgtatgatgagtacagcaaaggctacttggatcaggcttcagggagcgcg
atcatggagctcacggaaaatgaccaggtgtggctccagttgcccaatgcggaatcgaac
ggcctctactcctctgagtatgtccactcgtccttctcaggattcctagtggctcccata
tga

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Ontology (1)   
   KEGG BRITE (1)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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